miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24678 3' -59.7 NC_005264.1 + 104928 0.69 0.611419
Target:  5'- -gGCGgcGGaaccccCAGCCGUGCCAagCGCc -3'
miRNA:   3'- cgCGCauCC------GUCGGCACGGUagGCGu -5'
24678 3' -59.7 NC_005264.1 + 51781 0.67 0.720326
Target:  5'- cGCGCGgcGGCAcuucGuCCG-GCgaGUCCGCGc -3'
miRNA:   3'- -CGCGCauCCGU----C-GGCaCGg-UAGGCGU- -5'
24678 3' -59.7 NC_005264.1 + 31785 0.67 0.681153
Target:  5'- gGCGCuucgccuaaGGGCGGCgGUcGCCG-CCGCAg -3'
miRNA:   3'- -CGCGca-------UCCGUCGgCA-CGGUaGGCGU- -5'
24678 3' -59.7 NC_005264.1 + 70569 0.67 0.678184
Target:  5'- gGUGCauuGUAGGCAGCCGUGaaaccugauuugaaCC-UCgGCAu -3'
miRNA:   3'- -CGCG---CAUCCGUCGGCAC--------------GGuAGgCGU- -5'
24678 3' -59.7 NC_005264.1 + 59803 0.68 0.671243
Target:  5'- gGCGCGUAGcGCAccauGCU-UGCCGguagcgCCGCAc -3'
miRNA:   3'- -CGCGCAUC-CGU----CGGcACGGUa-----GGCGU- -5'
24678 3' -59.7 NC_005264.1 + 86226 0.68 0.671243
Target:  5'- uGCuCGUGGGCGGCCGa---GUUCGCAg -3'
miRNA:   3'- -CGcGCAUCCGUCGGCacggUAGGCGU- -5'
24678 3' -59.7 NC_005264.1 + 30643 0.68 0.671243
Target:  5'- aGCGCGUAGGUcGUCGUcGUCGUCguCGUc -3'
miRNA:   3'- -CGCGCAUCCGuCGGCA-CGGUAG--GCGu -5'
24678 3' -59.7 NC_005264.1 + 119605 0.68 0.641363
Target:  5'- -aGUccAGGCGGCaCGUGCCGcCUGCAu -3'
miRNA:   3'- cgCGcaUCCGUCG-GCACGGUaGGCGU- -5'
24678 3' -59.7 NC_005264.1 + 55616 0.68 0.631379
Target:  5'- cCGCGgcuGGC-GCCGaaUGCCAaCCGCGc -3'
miRNA:   3'- cGCGCau-CCGuCGGC--ACGGUaGGCGU- -5'
24678 3' -59.7 NC_005264.1 + 93862 0.67 0.720326
Target:  5'- aUGCGgcGGGUAGUCGUGCCGUg-GCAg -3'
miRNA:   3'- cGCGCa-UCCGUCGGCACGGUAggCGU- -5'
24678 3' -59.7 NC_005264.1 + 126707 0.67 0.729961
Target:  5'- aGCGCuacGUGGGCaaagaaaucgucGGCCGgcgaguaccaucUGCCAgCCGCGc -3'
miRNA:   3'- -CGCG---CAUCCG------------UCGGC------------ACGGUaGGCGU- -5'
24678 3' -59.7 NC_005264.1 + 3544 0.66 0.739515
Target:  5'- aCGCGgcGGCguccAGCaucucuCGUGCCAcuuccUCCGCGu -3'
miRNA:   3'- cGCGCauCCG----UCG------GCACGGU-----AGGCGU- -5'
24678 3' -59.7 NC_005264.1 + 138540 0.66 0.767608
Target:  5'- uGCGCGUagccacagAGGCcGCCGUGU---UCGCGa -3'
miRNA:   3'- -CGCGCA--------UCCGuCGGCACGguaGGCGU- -5'
24678 3' -59.7 NC_005264.1 + 106524 0.66 0.767608
Target:  5'- cGCGaCGgcGGCAGCgCG-GCCGcggaguuuUUCGCGa -3'
miRNA:   3'- -CGC-GCauCCGUCG-GCaCGGU--------AGGCGU- -5'
24678 3' -59.7 NC_005264.1 + 126123 0.66 0.764841
Target:  5'- uGCGCGgcGGCugAGCCGaUGgCAcuugcgcggcagaaUCCGCc -3'
miRNA:   3'- -CGCGCauCCG--UCGGC-ACgGU--------------AGGCGu -5'
24678 3' -59.7 NC_005264.1 + 86703 0.66 0.758347
Target:  5'- cGCGCGc-GGUcuuuGCC--GCCGUCCGCGu -3'
miRNA:   3'- -CGCGCauCCGu---CGGcaCGGUAGGCGU- -5'
24678 3' -59.7 NC_005264.1 + 126282 0.66 0.74898
Target:  5'- cCGCGgAGGCGGCCaUGCCGcuUUCGg- -3'
miRNA:   3'- cGCGCaUCCGUCGGcACGGU--AGGCgu -5'
24678 3' -59.7 NC_005264.1 + 33989 0.66 0.74898
Target:  5'- cGCGaaCGUGcGGCGGCCcauGUaGCCggCCGCGu -3'
miRNA:   3'- -CGC--GCAU-CCGUCGG---CA-CGGuaGGCGU- -5'
24678 3' -59.7 NC_005264.1 + 5826 0.66 0.74898
Target:  5'- -gGCGgcGGUGGCCGccacucGCCuggCCGCGg -3'
miRNA:   3'- cgCGCauCCGUCGGCa-----CGGua-GGCGU- -5'
24678 3' -59.7 NC_005264.1 + 36748 0.66 0.739515
Target:  5'- aGCGCGacGGCgccGGCCGgcGCCGUcgCCGCu -3'
miRNA:   3'- -CGCGCauCCG---UCGGCa-CGGUA--GGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.