Results 21 - 40 of 65 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24678 | 3' | -59.7 | NC_005264.1 | + | 86703 | 0.66 | 0.758347 |
Target: 5'- cGCGCGc-GGUcuuuGCC--GCCGUCCGCGu -3' miRNA: 3'- -CGCGCauCCGu---CGGcaCGGUAGGCGU- -5' |
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24678 | 3' | -59.7 | NC_005264.1 | + | 126282 | 0.66 | 0.74898 |
Target: 5'- cCGCGgAGGCGGCCaUGCCGcuUUCGg- -3' miRNA: 3'- cGCGCaUCCGUCGGcACGGU--AGGCgu -5' |
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24678 | 3' | -59.7 | NC_005264.1 | + | 33989 | 0.66 | 0.74898 |
Target: 5'- cGCGaaCGUGcGGCGGCCcauGUaGCCggCCGCGu -3' miRNA: 3'- -CGC--GCAU-CCGUCGG---CA-CGGuaGGCGU- -5' |
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24678 | 3' | -59.7 | NC_005264.1 | + | 5826 | 0.66 | 0.74898 |
Target: 5'- -gGCGgcGGUGGCCGccacucGCCuggCCGCGg -3' miRNA: 3'- cgCGCauCCGUCGGCa-----CGGua-GGCGU- -5' |
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24678 | 3' | -59.7 | NC_005264.1 | + | 31785 | 0.67 | 0.681153 |
Target: 5'- gGCGCuucgccuaaGGGCGGCgGUcGCCG-CCGCAg -3' miRNA: 3'- -CGCGca-------UCCGUCGgCA-CGGUaGGCGU- -5' |
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24678 | 3' | -59.7 | NC_005264.1 | + | 51781 | 0.67 | 0.720326 |
Target: 5'- cGCGCGgcGGCAcuucGuCCG-GCgaGUCCGCGc -3' miRNA: 3'- -CGCGCauCCGU----C-GGCaCGg-UAGGCGU- -5' |
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24678 | 3' | -59.7 | NC_005264.1 | + | 93862 | 0.67 | 0.720326 |
Target: 5'- aUGCGgcGGGUAGUCGUGCCGUg-GCAg -3' miRNA: 3'- cGCGCa-UCCGUCGGCACGGUAggCGU- -5' |
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24678 | 3' | -59.7 | NC_005264.1 | + | 126707 | 0.67 | 0.729961 |
Target: 5'- aGCGCuacGUGGGCaaagaaaucgucGGCCGgcgaguaccaucUGCCAgCCGCGc -3' miRNA: 3'- -CGCG---CAUCCG------------UCGGC------------ACGGUaGGCGU- -5' |
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24678 | 3' | -59.7 | NC_005264.1 | + | 3544 | 0.66 | 0.739515 |
Target: 5'- aCGCGgcGGCguccAGCaucucuCGUGCCAcuuccUCCGCGu -3' miRNA: 3'- cGCGCauCCG----UCG------GCACGGU-----AGGCGU- -5' |
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24678 | 3' | -59.7 | NC_005264.1 | + | 36748 | 0.66 | 0.739515 |
Target: 5'- aGCGCGacGGCgccGGCCGgcGCCGUcgCCGCu -3' miRNA: 3'- -CGCGCauCCG---UCGGCa-CGGUA--GGCGu -5' |
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24678 | 3' | -59.7 | NC_005264.1 | + | 68149 | 0.68 | 0.641363 |
Target: 5'- uCG-GUAGGCGGuUCGUGCaaCAUCUGCAu -3' miRNA: 3'- cGCgCAUCCGUC-GGCACG--GUAGGCGU- -5' |
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24678 | 3' | -59.7 | NC_005264.1 | + | 2573 | 0.68 | 0.63038 |
Target: 5'- -aGCGUcacaugaGGGUGGCCGUGCauaacCCGCGc -3' miRNA: 3'- cgCGCA-------UCCGUCGGCACGgua--GGCGU- -5' |
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24678 | 3' | -59.7 | NC_005264.1 | + | 156150 | 0.69 | 0.611419 |
Target: 5'- aGgGCG-AGGCGGCCGUcucgGCCucgCUGCu -3' miRNA: 3'- -CgCGCaUCCGUCGGCA----CGGua-GGCGu -5' |
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24678 | 3' | -59.7 | NC_005264.1 | + | 71851 | 0.69 | 0.601458 |
Target: 5'- aCGCGUcgcGGCGGCgGUGU--UCCGCGa -3' miRNA: 3'- cGCGCAu--CCGUCGgCACGguAGGCGU- -5' |
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24678 | 3' | -59.7 | NC_005264.1 | + | 65562 | 0.69 | 0.581607 |
Target: 5'- uGCGCG-AGGCAGCggccacuacCGUGCCAaggCCcgGCGg -3' miRNA: 3'- -CGCGCaUCCGUCG---------GCACGGUa--GG--CGU- -5' |
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24678 | 3' | -59.7 | NC_005264.1 | + | 149670 | 0.7 | 0.51352 |
Target: 5'- aGCGCGUAGGUcGUCGUcGUCGUCgucguCGCGa -3' miRNA: 3'- -CGCGCAUCCGuCGGCA-CGGUAG-----GCGU- -5' |
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24678 | 3' | -59.7 | NC_005264.1 | + | 4498 | 0.7 | 0.51352 |
Target: 5'- gGCGCGgu-GCGGCCGcuUGUguUCCGCGu -3' miRNA: 3'- -CGCGCaucCGUCGGC--ACGguAGGCGU- -5' |
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24678 | 3' | -59.7 | NC_005264.1 | + | 11648 | 0.73 | 0.372951 |
Target: 5'- aGCGCGgcaGGGCuGCUGUcGUCGUCgCGCAa -3' miRNA: 3'- -CGCGCa--UCCGuCGGCA-CGGUAG-GCGU- -5' |
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24678 | 3' | -59.7 | NC_005264.1 | + | 34144 | 0.74 | 0.320208 |
Target: 5'- gGCGCGUAGGCuucgGGUCGUGgUA-CCGCGc -3' miRNA: 3'- -CGCGCAUCCG----UCGGCACgGUaGGCGU- -5' |
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24678 | 3' | -59.7 | NC_005264.1 | + | 51280 | 0.65 | 0.783084 |
Target: 5'- cGCGCGUuaccacgagcaggaAGGCAcccUCGUGCaCGUCgGCGu -3' miRNA: 3'- -CGCGCA--------------UCCGUc--GGCACG-GUAGgCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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