miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24678 5' -52.6 NC_005264.1 + 152377 0.66 0.984047
Target:  5'- -aCAUUGAcggcgGCGGUcACUCUGCCcuCGUc -3'
miRNA:   3'- agGUAGCUa----CGUCA-UGAGACGGu-GCG- -5'
24678 5' -52.6 NC_005264.1 + 147894 0.66 0.984047
Target:  5'- -aCGcgCGAUGCAG-ACUgugaugGCCGCGCu -3'
miRNA:   3'- agGUa-GCUACGUCaUGAga----CGGUGCG- -5'
24678 5' -52.6 NC_005264.1 + 30239 0.66 0.984047
Target:  5'- gCCAgCGcgGCAaaGCggUGCCACGCu -3'
miRNA:   3'- aGGUaGCuaCGUcaUGagACGGUGCG- -5'
24678 5' -52.6 NC_005264.1 + 93037 0.66 0.984047
Target:  5'- gUCCGcgcCGaAUGC-GUGCUgcugcgCUGCCAUGCg -3'
miRNA:   3'- -AGGUa--GC-UACGuCAUGA------GACGGUGCG- -5'
24678 5' -52.6 NC_005264.1 + 58451 0.66 0.982088
Target:  5'- uUCCAgguugUCGGgcgcCAGccuaUCUGCCGCGCg -3'
miRNA:   3'- -AGGU-----AGCUac--GUCaug-AGACGGUGCG- -5'
24678 5' -52.6 NC_005264.1 + 46580 0.66 0.982088
Target:  5'- uUCCAagUCGcgcGUGCGGagGCUCUGuCCcUGCg -3'
miRNA:   3'- -AGGU--AGC---UACGUCa-UGAGAC-GGuGCG- -5'
24678 5' -52.6 NC_005264.1 + 160939 0.66 0.981675
Target:  5'- aUCCcgcaGUCGcgGCGGggucuguagcuUUCUGCCACGa -3'
miRNA:   3'- -AGG----UAGCuaCGUCau---------GAGACGGUGCg -5'
24678 5' -52.6 NC_005264.1 + 12911 0.66 0.977636
Target:  5'- gCCuugCGAUGguGUGCgugGCCAuCGUg -3'
miRNA:   3'- aGGua-GCUACguCAUGagaCGGU-GCG- -5'
24678 5' -52.6 NC_005264.1 + 73095 0.66 0.975126
Target:  5'- uUCCAUgGAcGUAGUACgaguuUCUGuCUACGUc -3'
miRNA:   3'- -AGGUAgCUaCGUCAUG-----AGAC-GGUGCG- -5'
24678 5' -52.6 NC_005264.1 + 143724 0.66 0.975126
Target:  5'- cCCAUC---GUAGUGCUCgucuCCGCGCc -3'
miRNA:   3'- aGGUAGcuaCGUCAUGAGac--GGUGCG- -5'
24678 5' -52.6 NC_005264.1 + 59897 0.66 0.975126
Target:  5'- -gCAUCGcgGgcCAGUGCcCUGUgGCGCa -3'
miRNA:   3'- agGUAGCuaC--GUCAUGaGACGgUGCG- -5'
24678 5' -52.6 NC_005264.1 + 12782 0.67 0.972417
Target:  5'- -aCAaCGAUGCGGUca--UGCCugGCa -3'
miRNA:   3'- agGUaGCUACGUCAugagACGGugCG- -5'
24678 5' -52.6 NC_005264.1 + 6722 0.67 0.972417
Target:  5'- gUCCuagCGucGCGGUACUCcGCgGCGUg -3'
miRNA:   3'- -AGGua-GCuaCGUCAUGAGaCGgUGCG- -5'
24678 5' -52.6 NC_005264.1 + 108696 0.67 0.972417
Target:  5'- aCCGUCGAUGUAGUcggcaccgACcCcGgCGCGCu -3'
miRNA:   3'- aGGUAGCUACGUCA--------UGaGaCgGUGCG- -5'
24678 5' -52.6 NC_005264.1 + 41913 0.67 0.971851
Target:  5'- aUCCgcaGUCGcgGCGGggucuguagcuUUCUGCCACGa -3'
miRNA:   3'- -AGG---UAGCuaCGUCau---------GAGACGGUGCg -5'
24678 5' -52.6 NC_005264.1 + 84455 0.67 0.969501
Target:  5'- uUCCAgauugcCGcGUGCaucgGGUGCggCUGCUACGCu -3'
miRNA:   3'- -AGGUa-----GC-UACG----UCAUGa-GACGGUGCG- -5'
24678 5' -52.6 NC_005264.1 + 123844 0.67 0.966372
Target:  5'- aUCCGUCGucgcucUGCAGgugUUCcGCCAgGCg -3'
miRNA:   3'- -AGGUAGCu-----ACGUCau-GAGaCGGUgCG- -5'
24678 5' -52.6 NC_005264.1 + 110367 0.67 0.966372
Target:  5'- aCCAgguuUCGGUaGC-GUuuUCUGCUACGCg -3'
miRNA:   3'- aGGU----AGCUA-CGuCAugAGACGGUGCG- -5'
24678 5' -52.6 NC_005264.1 + 4818 0.67 0.966372
Target:  5'- aUCCGUCGucgcucUGCAGgugUUCcGCCAgGCg -3'
miRNA:   3'- -AGGUAGCu-----ACGUCau-GAGaCGGUgCG- -5'
24678 5' -52.6 NC_005264.1 + 85113 0.67 0.966372
Target:  5'- gUCCcUCGgcGCAuUGCgagacaaaUGCCACGCg -3'
miRNA:   3'- -AGGuAGCuaCGUcAUGag------ACGGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.