Results 1 - 20 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
24678 | 5' | -52.6 | NC_005264.1 | + | 110301 | 1.14 | 0.003233 |
Target: 5'- uUCCAUCGAUGCAGUACUCUGCCACGCg -3' miRNA: 3'- -AGGUAGCUACGUCAUGAGACGGUGCG- -5' |
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24678 | 5' | -52.6 | NC_005264.1 | + | 6122 | 0.78 | 0.499474 |
Target: 5'- gUCCAUCaGGUGCGGgaggGCgaggGCCGCGCg -3' miRNA: 3'- -AGGUAG-CUACGUCa---UGaga-CGGUGCG- -5' |
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24678 | 5' | -52.6 | NC_005264.1 | + | 125149 | 0.78 | 0.499474 |
Target: 5'- gUCCAUCaGGUGCGGgaggGCgaggGCCGCGCg -3' miRNA: 3'- -AGGUAG-CUACGUCa---UGaga-CGGUGCG- -5' |
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24678 | 5' | -52.6 | NC_005264.1 | + | 125436 | 0.75 | 0.653352 |
Target: 5'- cCCAgCGAcgagcgauuguUGCGGUccCUCUGCCGCGCc -3' miRNA: 3'- aGGUaGCU-----------ACGUCAu-GAGACGGUGCG- -5' |
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24678 | 5' | -52.6 | NC_005264.1 | + | 132579 | 0.74 | 0.694813 |
Target: 5'- gCCGcgcuacacuUCGGUGCAGcguggcaccGCUUUGCCGCGCu -3' miRNA: 3'- aGGU---------AGCUACGUCa--------UGAGACGGUGCG- -5' |
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24678 | 5' | -52.6 | NC_005264.1 | + | 107986 | 0.74 | 0.705066 |
Target: 5'- aCCGUgGAUGCGGgcgGCUCccagGUCACGUc -3' miRNA: 3'- aGGUAgCUACGUCa--UGAGa---CGGUGCG- -5' |
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24678 | 5' | -52.6 | NC_005264.1 | + | 27389 | 0.74 | 0.705066 |
Target: 5'- gUUUAUCG-UGCAuGUACUCUaCCGCGCa -3' miRNA: 3'- -AGGUAGCuACGU-CAUGAGAcGGUGCG- -5' |
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24678 | 5' | -52.6 | NC_005264.1 | + | 75309 | 0.74 | 0.694813 |
Target: 5'- cCCA-CGcUGCAGca-UCUGCCGCGCg -3' miRNA: 3'- aGGUaGCuACGUCaugAGACGGUGCG- -5' |
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24678 | 5' | -52.6 | NC_005264.1 | + | 8441 | 0.72 | 0.820308 |
Target: 5'- gCCAUCGucugGCGGaGCUCUGaCCAUaGCa -3' miRNA: 3'- aGGUAGCua--CGUCaUGAGAC-GGUG-CG- -5' |
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24678 | 5' | -52.6 | NC_005264.1 | + | 4238 | 0.72 | 0.783956 |
Target: 5'- uUCCAUCucUGCGGagcCUCUugccGCCGCGCa -3' miRNA: 3'- -AGGUAGcuACGUCau-GAGA----CGGUGCG- -5' |
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24678 | 5' | -52.6 | NC_005264.1 | + | 123024 | 0.72 | 0.820308 |
Target: 5'- cUCCAUCuagGCGGaUGCg-UGCCGCGCa -3' miRNA: 3'- -AGGUAGcuaCGUC-AUGagACGGUGCG- -5' |
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24678 | 5' | -52.6 | NC_005264.1 | + | 142954 | 0.7 | 0.876784 |
Target: 5'- uUCCGccgCGAauacuUGCGGUGCauaagGCCGCGCa -3' miRNA: 3'- -AGGUa--GCU-----ACGUCAUGaga--CGGUGCG- -5' |
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24678 | 5' | -52.6 | NC_005264.1 | + | 36686 | 0.7 | 0.883993 |
Target: 5'- cUCUggCGcaaugGCGG-AUUCUGCCGCGCa -3' miRNA: 3'- -AGGuaGCua---CGUCaUGAGACGGUGCG- -5' |
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24678 | 5' | -52.6 | NC_005264.1 | + | 89760 | 0.7 | 0.897709 |
Target: 5'- cCCGUCGAaGUAGaga--UGCCGCGCg -3' miRNA: 3'- aGGUAGCUaCGUCaugagACGGUGCG- -5' |
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24678 | 5' | -52.6 | NC_005264.1 | + | 146925 | 0.69 | 0.904208 |
Target: 5'- gCUAUCGggGCAGUAgUUcGUgGCGCa -3' miRNA: 3'- aGGUAGCuaCGUCAUgAGaCGgUGCG- -5' |
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24678 | 5' | -52.6 | NC_005264.1 | + | 157689 | 0.69 | 0.904208 |
Target: 5'- uUCgGaCGAUGCGGcGCg--GCCGCGCa -3' miRNA: 3'- -AGgUaGCUACGUCaUGagaCGGUGCG- -5' |
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24678 | 5' | -52.6 | NC_005264.1 | + | 58630 | 0.69 | 0.904208 |
Target: 5'- cCCGUgCGAcGC-GUGCUCUGCgGCGa -3' miRNA: 3'- aGGUA-GCUaCGuCAUGAGACGgUGCg -5' |
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24678 | 5' | -52.6 | NC_005264.1 | + | 126727 | 0.69 | 0.916473 |
Target: 5'- aUCGUCGGccgGCgAGUACcaUCUGCCAgcCGCg -3' miRNA: 3'- aGGUAGCUa--CG-UCAUG--AGACGGU--GCG- -5' |
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24678 | 5' | -52.6 | NC_005264.1 | + | 52552 | 0.69 | 0.927208 |
Target: 5'- -gCAUCGAUggaauggGCGGUGCggauggcacggCUGCCuACGCg -3' miRNA: 3'- agGUAGCUA-------CGUCAUGa----------GACGG-UGCG- -5' |
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24678 | 5' | -52.6 | NC_005264.1 | + | 35800 | 0.69 | 0.933013 |
Target: 5'- gCCGUCGugGCGGgcgcCUCUGCCGgcccCGCa -3' miRNA: 3'- aGGUAGCuaCGUCau--GAGACGGU----GCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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