miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24678 5' -52.6 NC_005264.1 + 110301 1.14 0.003233
Target:  5'- uUCCAUCGAUGCAGUACUCUGCCACGCg -3'
miRNA:   3'- -AGGUAGCUACGUCAUGAGACGGUGCG- -5'
24678 5' -52.6 NC_005264.1 + 6122 0.78 0.499474
Target:  5'- gUCCAUCaGGUGCGGgaggGCgaggGCCGCGCg -3'
miRNA:   3'- -AGGUAG-CUACGUCa---UGaga-CGGUGCG- -5'
24678 5' -52.6 NC_005264.1 + 125149 0.78 0.499474
Target:  5'- gUCCAUCaGGUGCGGgaggGCgaggGCCGCGCg -3'
miRNA:   3'- -AGGUAG-CUACGUCa---UGaga-CGGUGCG- -5'
24678 5' -52.6 NC_005264.1 + 125436 0.75 0.653352
Target:  5'- cCCAgCGAcgagcgauuguUGCGGUccCUCUGCCGCGCc -3'
miRNA:   3'- aGGUaGCU-----------ACGUCAu-GAGACGGUGCG- -5'
24678 5' -52.6 NC_005264.1 + 132579 0.74 0.694813
Target:  5'- gCCGcgcuacacuUCGGUGCAGcguggcaccGCUUUGCCGCGCu -3'
miRNA:   3'- aGGU---------AGCUACGUCa--------UGAGACGGUGCG- -5'
24678 5' -52.6 NC_005264.1 + 75309 0.74 0.694813
Target:  5'- cCCA-CGcUGCAGca-UCUGCCGCGCg -3'
miRNA:   3'- aGGUaGCuACGUCaugAGACGGUGCG- -5'
24678 5' -52.6 NC_005264.1 + 107986 0.74 0.705066
Target:  5'- aCCGUgGAUGCGGgcgGCUCccagGUCACGUc -3'
miRNA:   3'- aGGUAgCUACGUCa--UGAGa---CGGUGCG- -5'
24678 5' -52.6 NC_005264.1 + 27389 0.74 0.705066
Target:  5'- gUUUAUCG-UGCAuGUACUCUaCCGCGCa -3'
miRNA:   3'- -AGGUAGCuACGU-CAUGAGAcGGUGCG- -5'
24678 5' -52.6 NC_005264.1 + 4238 0.72 0.783956
Target:  5'- uUCCAUCucUGCGGagcCUCUugccGCCGCGCa -3'
miRNA:   3'- -AGGUAGcuACGUCau-GAGA----CGGUGCG- -5'
24678 5' -52.6 NC_005264.1 + 8441 0.72 0.820308
Target:  5'- gCCAUCGucugGCGGaGCUCUGaCCAUaGCa -3'
miRNA:   3'- aGGUAGCua--CGUCaUGAGAC-GGUG-CG- -5'
24678 5' -52.6 NC_005264.1 + 123024 0.72 0.820308
Target:  5'- cUCCAUCuagGCGGaUGCg-UGCCGCGCa -3'
miRNA:   3'- -AGGUAGcuaCGUC-AUGagACGGUGCG- -5'
24678 5' -52.6 NC_005264.1 + 142954 0.7 0.876784
Target:  5'- uUCCGccgCGAauacuUGCGGUGCauaagGCCGCGCa -3'
miRNA:   3'- -AGGUa--GCU-----ACGUCAUGaga--CGGUGCG- -5'
24678 5' -52.6 NC_005264.1 + 36686 0.7 0.883993
Target:  5'- cUCUggCGcaaugGCGG-AUUCUGCCGCGCa -3'
miRNA:   3'- -AGGuaGCua---CGUCaUGAGACGGUGCG- -5'
24678 5' -52.6 NC_005264.1 + 89760 0.7 0.897709
Target:  5'- cCCGUCGAaGUAGaga--UGCCGCGCg -3'
miRNA:   3'- aGGUAGCUaCGUCaugagACGGUGCG- -5'
24678 5' -52.6 NC_005264.1 + 146925 0.69 0.904208
Target:  5'- gCUAUCGggGCAGUAgUUcGUgGCGCa -3'
miRNA:   3'- aGGUAGCuaCGUCAUgAGaCGgUGCG- -5'
24678 5' -52.6 NC_005264.1 + 157689 0.69 0.904208
Target:  5'- uUCgGaCGAUGCGGcGCg--GCCGCGCa -3'
miRNA:   3'- -AGgUaGCUACGUCaUGagaCGGUGCG- -5'
24678 5' -52.6 NC_005264.1 + 58630 0.69 0.904208
Target:  5'- cCCGUgCGAcGC-GUGCUCUGCgGCGa -3'
miRNA:   3'- aGGUA-GCUaCGuCAUGAGACGgUGCg -5'
24678 5' -52.6 NC_005264.1 + 52769 0.69 0.909849
Target:  5'- uUCCGcuacgCGGUcGUGGUACUCgcguacugucgcuUGCCGCGCc -3'
miRNA:   3'- -AGGUa----GCUA-CGUCAUGAG-------------ACGGUGCG- -5'
24678 5' -52.6 NC_005264.1 + 126727 0.69 0.916473
Target:  5'- aUCGUCGGccgGCgAGUACcaUCUGCCAgcCGCg -3'
miRNA:   3'- aGGUAGCUa--CG-UCAUG--AGACGGU--GCG- -5'
24678 5' -52.6 NC_005264.1 + 9920 0.69 0.916473
Target:  5'- aCUcgCGAcUGCGG-GCUUUGCgGCGCg -3'
miRNA:   3'- aGGuaGCU-ACGUCaUGAGACGgUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.