miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24678 5' -52.6 NC_005264.1 + 4818 0.67 0.966372
Target:  5'- aUCCGUCGucgcucUGCAGgugUUCcGCCAgGCg -3'
miRNA:   3'- -AGGUAGCu-----ACGUCau-GAGaCGGUgCG- -5'
24678 5' -52.6 NC_005264.1 + 148122 0.67 0.959448
Target:  5'- aUCGUCGGgucgggGCcguuaaAGUGCUCUGCU-CGCg -3'
miRNA:   3'- aGGUAGCUa-----CG------UCAUGAGACGGuGCG- -5'
24678 5' -52.6 NC_005264.1 + 39721 0.67 0.959448
Target:  5'- cCCGUUGGccaaGUAGUACUCgaUGCCcccggaGCGCa -3'
miRNA:   3'- aGGUAGCUa---CGUCAUGAG--ACGG------UGCG- -5'
24678 5' -52.6 NC_005264.1 + 14632 0.68 0.955643
Target:  5'- -gCAUCGAUGCgaAGUGCUagacgGCCGC-Ca -3'
miRNA:   3'- agGUAGCUACG--UCAUGAga---CGGUGcG- -5'
24678 5' -52.6 NC_005264.1 + 76667 0.68 0.954853
Target:  5'- gCCAcCGGUGCGGcagaagaUAcCUCUGCCcagcuugGCGCg -3'
miRNA:   3'- aGGUaGCUACGUC-------AU-GAGACGG-------UGCG- -5'
24678 5' -52.6 NC_005264.1 + 43789 0.68 0.951602
Target:  5'- gCCGUgGGUGCGGggcgcaguUUCUGUCGCGa -3'
miRNA:   3'- aGGUAgCUACGUCau------GAGACGGUGCg -5'
24678 5' -52.6 NC_005264.1 + 22300 0.68 0.951602
Target:  5'- gUCGUCGGUaggauaGCuGUAgUCUGgCGCGCg -3'
miRNA:   3'- aGGUAGCUA------CGuCAUgAGACgGUGCG- -5'
24678 5' -52.6 NC_005264.1 + 162815 0.68 0.951602
Target:  5'- gCCGUgGGUGCGGggcgcaguUUCUGUCGCGa -3'
miRNA:   3'- aGGUAgCUACGUCau------GAGACGGUGCg -5'
24678 5' -52.6 NC_005264.1 + 87100 0.68 0.938029
Target:  5'- gUCAUCGcUGguGaACcgcaaCUGCCACGCg -3'
miRNA:   3'- aGGUAGCuACguCaUGa----GACGGUGCG- -5'
24678 5' -52.6 NC_005264.1 + 35800 0.69 0.933013
Target:  5'- gCCGUCGugGCGGgcgcCUCUGCCGgcccCGCa -3'
miRNA:   3'- aGGUAGCuaCGUCau--GAGACGGU----GCG- -5'
24678 5' -52.6 NC_005264.1 + 154826 0.69 0.933013
Target:  5'- gCCGUCGugGCGGgcgcCUCUGCCGgcccCGCa -3'
miRNA:   3'- aGGUAGCuaCGUCau--GAGACGGU----GCG- -5'
24678 5' -52.6 NC_005264.1 + 52552 0.69 0.927208
Target:  5'- -gCAUCGAUggaauggGCGGUGCggauggcacggCUGCCuACGCg -3'
miRNA:   3'- agGUAGCUA-------CGUCAUGa----------GACGG-UGCG- -5'
24678 5' -52.6 NC_005264.1 + 9920 0.69 0.916473
Target:  5'- aCUcgCGAcUGCGG-GCUUUGCgGCGCg -3'
miRNA:   3'- aGGuaGCU-ACGUCaUGAGACGgUGCG- -5'
24678 5' -52.6 NC_005264.1 + 126727 0.69 0.916473
Target:  5'- aUCGUCGGccgGCgAGUACcaUCUGCCAgcCGCg -3'
miRNA:   3'- aGGUAGCUa--CG-UCAUG--AGACGGU--GCG- -5'
24678 5' -52.6 NC_005264.1 + 52769 0.69 0.909849
Target:  5'- uUCCGcuacgCGGUcGUGGUACUCgcguacugucgcuUGCCGCGCc -3'
miRNA:   3'- -AGGUa----GCUA-CGUCAUGAG-------------ACGGUGCG- -5'
24678 5' -52.6 NC_005264.1 + 58630 0.69 0.904208
Target:  5'- cCCGUgCGAcGC-GUGCUCUGCgGCGa -3'
miRNA:   3'- aGGUA-GCUaCGuCAUGAGACGgUGCg -5'
24678 5' -52.6 NC_005264.1 + 157689 0.69 0.904208
Target:  5'- uUCgGaCGAUGCGGcGCg--GCCGCGCa -3'
miRNA:   3'- -AGgUaGCUACGUCaUGagaCGGUGCG- -5'
24678 5' -52.6 NC_005264.1 + 146925 0.69 0.904208
Target:  5'- gCUAUCGggGCAGUAgUUcGUgGCGCa -3'
miRNA:   3'- aGGUAGCuaCGUCAUgAGaCGgUGCG- -5'
24678 5' -52.6 NC_005264.1 + 89760 0.7 0.897709
Target:  5'- cCCGUCGAaGUAGaga--UGCCGCGCg -3'
miRNA:   3'- aGGUAGCUaCGUCaugagACGGUGCG- -5'
24678 5' -52.6 NC_005264.1 + 36686 0.7 0.883993
Target:  5'- cUCUggCGcaaugGCGG-AUUCUGCCGCGCa -3'
miRNA:   3'- -AGGuaGCua---CGUCaUGAGACGGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.