Results 41 - 52 of 52 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24678 | 5' | -52.6 | NC_005264.1 | + | 142954 | 0.7 | 0.876784 |
Target: 5'- uUCCGccgCGAauacuUGCGGUGCauaagGCCGCGCa -3' miRNA: 3'- -AGGUa--GCU-----ACGUCAUGaga--CGGUGCG- -5' |
|||||||
24678 | 5' | -52.6 | NC_005264.1 | + | 123024 | 0.72 | 0.820308 |
Target: 5'- cUCCAUCuagGCGGaUGCg-UGCCGCGCa -3' miRNA: 3'- -AGGUAGcuaCGUC-AUGagACGGUGCG- -5' |
|||||||
24678 | 5' | -52.6 | NC_005264.1 | + | 8441 | 0.72 | 0.820308 |
Target: 5'- gCCAUCGucugGCGGaGCUCUGaCCAUaGCa -3' miRNA: 3'- aGGUAGCua--CGUCaUGAGAC-GGUG-CG- -5' |
|||||||
24678 | 5' | -52.6 | NC_005264.1 | + | 4238 | 0.72 | 0.783956 |
Target: 5'- uUCCAUCucUGCGGagcCUCUugccGCCGCGCa -3' miRNA: 3'- -AGGUAGcuACGUCau-GAGA----CGGUGCG- -5' |
|||||||
24678 | 5' | -52.6 | NC_005264.1 | + | 27389 | 0.74 | 0.705066 |
Target: 5'- gUUUAUCG-UGCAuGUACUCUaCCGCGCa -3' miRNA: 3'- -AGGUAGCuACGU-CAUGAGAcGGUGCG- -5' |
|||||||
24678 | 5' | -52.6 | NC_005264.1 | + | 107986 | 0.74 | 0.705066 |
Target: 5'- aCCGUgGAUGCGGgcgGCUCccagGUCACGUc -3' miRNA: 3'- aGGUAgCUACGUCa--UGAGa---CGGUGCG- -5' |
|||||||
24678 | 5' | -52.6 | NC_005264.1 | + | 75309 | 0.74 | 0.694813 |
Target: 5'- cCCA-CGcUGCAGca-UCUGCCGCGCg -3' miRNA: 3'- aGGUaGCuACGUCaugAGACGGUGCG- -5' |
|||||||
24678 | 5' | -52.6 | NC_005264.1 | + | 132579 | 0.74 | 0.694813 |
Target: 5'- gCCGcgcuacacuUCGGUGCAGcguggcaccGCUUUGCCGCGCu -3' miRNA: 3'- aGGU---------AGCUACGUCa--------UGAGACGGUGCG- -5' |
|||||||
24678 | 5' | -52.6 | NC_005264.1 | + | 125436 | 0.75 | 0.653352 |
Target: 5'- cCCAgCGAcgagcgauuguUGCGGUccCUCUGCCGCGCc -3' miRNA: 3'- aGGUaGCU-----------ACGUCAu-GAGACGGUGCG- -5' |
|||||||
24678 | 5' | -52.6 | NC_005264.1 | + | 6122 | 0.78 | 0.499474 |
Target: 5'- gUCCAUCaGGUGCGGgaggGCgaggGCCGCGCg -3' miRNA: 3'- -AGGUAG-CUACGUCa---UGaga-CGGUGCG- -5' |
|||||||
24678 | 5' | -52.6 | NC_005264.1 | + | 125149 | 0.78 | 0.499474 |
Target: 5'- gUCCAUCaGGUGCGGgaggGCgaggGCCGCGCg -3' miRNA: 3'- -AGGUAG-CUACGUCa---UGaga-CGGUGCG- -5' |
|||||||
24678 | 5' | -52.6 | NC_005264.1 | + | 110301 | 1.14 | 0.003233 |
Target: 5'- uUCCAUCGAUGCAGUACUCUGCCACGCg -3' miRNA: 3'- -AGGUAGCUACGUCAUGAGACGGUGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home