miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24678 5' -52.6 NC_005264.1 + 4238 0.72 0.783956
Target:  5'- uUCCAUCucUGCGGagcCUCUugccGCCGCGCa -3'
miRNA:   3'- -AGGUAGcuACGUCau-GAGA----CGGUGCG- -5'
24678 5' -52.6 NC_005264.1 + 4818 0.67 0.966372
Target:  5'- aUCCGUCGucgcucUGCAGgugUUCcGCCAgGCg -3'
miRNA:   3'- -AGGUAGCu-----ACGUCau-GAGaCGGUgCG- -5'
24678 5' -52.6 NC_005264.1 + 6122 0.78 0.499474
Target:  5'- gUCCAUCaGGUGCGGgaggGCgaggGCCGCGCg -3'
miRNA:   3'- -AGGUAG-CUACGUCa---UGaga-CGGUGCG- -5'
24678 5' -52.6 NC_005264.1 + 6722 0.67 0.972417
Target:  5'- gUCCuagCGucGCGGUACUCcGCgGCGUg -3'
miRNA:   3'- -AGGua-GCuaCGUCAUGAGaCGgUGCG- -5'
24678 5' -52.6 NC_005264.1 + 8441 0.72 0.820308
Target:  5'- gCCAUCGucugGCGGaGCUCUGaCCAUaGCa -3'
miRNA:   3'- aGGUAGCua--CGUCaUGAGAC-GGUG-CG- -5'
24678 5' -52.6 NC_005264.1 + 9920 0.69 0.916473
Target:  5'- aCUcgCGAcUGCGG-GCUUUGCgGCGCg -3'
miRNA:   3'- aGGuaGCU-ACGUCaUGAGACGgUGCG- -5'
24678 5' -52.6 NC_005264.1 + 12782 0.67 0.972417
Target:  5'- -aCAaCGAUGCGGUca--UGCCugGCa -3'
miRNA:   3'- agGUaGCUACGUCAugagACGGugCG- -5'
24678 5' -52.6 NC_005264.1 + 12911 0.66 0.977636
Target:  5'- gCCuugCGAUGguGUGCgugGCCAuCGUg -3'
miRNA:   3'- aGGua-GCUACguCAUGagaCGGU-GCG- -5'
24678 5' -52.6 NC_005264.1 + 14632 0.68 0.955643
Target:  5'- -gCAUCGAUGCgaAGUGCUagacgGCCGC-Ca -3'
miRNA:   3'- agGUAGCUACG--UCAUGAga---CGGUGcG- -5'
24678 5' -52.6 NC_005264.1 + 22300 0.68 0.951602
Target:  5'- gUCGUCGGUaggauaGCuGUAgUCUGgCGCGCg -3'
miRNA:   3'- aGGUAGCUA------CGuCAUgAGACgGUGCG- -5'
24678 5' -52.6 NC_005264.1 + 27389 0.74 0.705066
Target:  5'- gUUUAUCG-UGCAuGUACUCUaCCGCGCa -3'
miRNA:   3'- -AGGUAGCuACGU-CAUGAGAcGGUGCG- -5'
24678 5' -52.6 NC_005264.1 + 30239 0.66 0.984047
Target:  5'- gCCAgCGcgGCAaaGCggUGCCACGCu -3'
miRNA:   3'- aGGUaGCuaCGUcaUGagACGGUGCG- -5'
24678 5' -52.6 NC_005264.1 + 35800 0.69 0.933013
Target:  5'- gCCGUCGugGCGGgcgcCUCUGCCGgcccCGCa -3'
miRNA:   3'- aGGUAGCuaCGUCau--GAGACGGU----GCG- -5'
24678 5' -52.6 NC_005264.1 + 36686 0.7 0.883993
Target:  5'- cUCUggCGcaaugGCGG-AUUCUGCCGCGCa -3'
miRNA:   3'- -AGGuaGCua---CGUCaUGAGACGGUGCG- -5'
24678 5' -52.6 NC_005264.1 + 39721 0.67 0.959448
Target:  5'- cCCGUUGGccaaGUAGUACUCgaUGCCcccggaGCGCa -3'
miRNA:   3'- aGGUAGCUa---CGUCAUGAG--ACGG------UGCG- -5'
24678 5' -52.6 NC_005264.1 + 41913 0.67 0.971851
Target:  5'- aUCCgcaGUCGcgGCGGggucuguagcuUUCUGCCACGa -3'
miRNA:   3'- -AGG---UAGCuaCGUCau---------GAGACGGUGCg -5'
24678 5' -52.6 NC_005264.1 + 43789 0.68 0.951602
Target:  5'- gCCGUgGGUGCGGggcgcaguUUCUGUCGCGa -3'
miRNA:   3'- aGGUAgCUACGUCau------GAGACGGUGCg -5'
24678 5' -52.6 NC_005264.1 + 46580 0.66 0.982088
Target:  5'- uUCCAagUCGcgcGUGCGGagGCUCUGuCCcUGCg -3'
miRNA:   3'- -AGGU--AGC---UACGUCa-UGAGAC-GGuGCG- -5'
24678 5' -52.6 NC_005264.1 + 52552 0.69 0.927208
Target:  5'- -gCAUCGAUggaauggGCGGUGCggauggcacggCUGCCuACGCg -3'
miRNA:   3'- agGUAGCUA-------CGUCAUGa----------GACGG-UGCG- -5'
24678 5' -52.6 NC_005264.1 + 52769 0.69 0.909849
Target:  5'- uUCCGcuacgCGGUcGUGGUACUCgcguacugucgcuUGCCGCGCc -3'
miRNA:   3'- -AGGUa----GCUA-CGUCAUGAG-------------ACGGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.