miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24678 5' -52.6 NC_005264.1 + 58451 0.66 0.982088
Target:  5'- uUCCAgguugUCGGgcgcCAGccuaUCUGCCGCGCg -3'
miRNA:   3'- -AGGU-----AGCUac--GUCaug-AGACGGUGCG- -5'
24678 5' -52.6 NC_005264.1 + 58630 0.69 0.904208
Target:  5'- cCCGUgCGAcGC-GUGCUCUGCgGCGa -3'
miRNA:   3'- aGGUA-GCUaCGuCAUGAGACGgUGCg -5'
24678 5' -52.6 NC_005264.1 + 59897 0.66 0.975126
Target:  5'- -gCAUCGcgGgcCAGUGCcCUGUgGCGCa -3'
miRNA:   3'- agGUAGCuaC--GUCAUGaGACGgUGCG- -5'
24678 5' -52.6 NC_005264.1 + 73095 0.66 0.975126
Target:  5'- uUCCAUgGAcGUAGUACgaguuUCUGuCUACGUc -3'
miRNA:   3'- -AGGUAgCUaCGUCAUG-----AGAC-GGUGCG- -5'
24678 5' -52.6 NC_005264.1 + 75309 0.74 0.694813
Target:  5'- cCCA-CGcUGCAGca-UCUGCCGCGCg -3'
miRNA:   3'- aGGUaGCuACGUCaugAGACGGUGCG- -5'
24678 5' -52.6 NC_005264.1 + 76667 0.68 0.954853
Target:  5'- gCCAcCGGUGCGGcagaagaUAcCUCUGCCcagcuugGCGCg -3'
miRNA:   3'- aGGUaGCUACGUC-------AU-GAGACGG-------UGCG- -5'
24678 5' -52.6 NC_005264.1 + 84455 0.67 0.969501
Target:  5'- uUCCAgauugcCGcGUGCaucgGGUGCggCUGCUACGCu -3'
miRNA:   3'- -AGGUa-----GC-UACG----UCAUGa-GACGGUGCG- -5'
24678 5' -52.6 NC_005264.1 + 85113 0.67 0.966372
Target:  5'- gUCCcUCGgcGCAuUGCgagacaaaUGCCACGCg -3'
miRNA:   3'- -AGGuAGCuaCGUcAUGag------ACGGUGCG- -5'
24678 5' -52.6 NC_005264.1 + 87100 0.68 0.938029
Target:  5'- gUCAUCGcUGguGaACcgcaaCUGCCACGCg -3'
miRNA:   3'- aGGUAGCuACguCaUGa----GACGGUGCG- -5'
24678 5' -52.6 NC_005264.1 + 89760 0.7 0.897709
Target:  5'- cCCGUCGAaGUAGaga--UGCCGCGCg -3'
miRNA:   3'- aGGUAGCUaCGUCaugagACGGUGCG- -5'
24678 5' -52.6 NC_005264.1 + 93037 0.66 0.984047
Target:  5'- gUCCGcgcCGaAUGC-GUGCUgcugcgCUGCCAUGCg -3'
miRNA:   3'- -AGGUa--GC-UACGuCAUGA------GACGGUGCG- -5'
24678 5' -52.6 NC_005264.1 + 103932 0.67 0.966372
Target:  5'- gCCAUCGAggagGCGGca-UCcGCUAUGCg -3'
miRNA:   3'- aGGUAGCUa---CGUCaugAGaCGGUGCG- -5'
24678 5' -52.6 NC_005264.1 + 107986 0.74 0.705066
Target:  5'- aCCGUgGAUGCGGgcgGCUCccagGUCACGUc -3'
miRNA:   3'- aGGUAgCUACGUCa--UGAGa---CGGUGCG- -5'
24678 5' -52.6 NC_005264.1 + 108696 0.67 0.972417
Target:  5'- aCCGUCGAUGUAGUcggcaccgACcCcGgCGCGCu -3'
miRNA:   3'- aGGUAGCUACGUCA--------UGaGaCgGUGCG- -5'
24678 5' -52.6 NC_005264.1 + 110301 1.14 0.003233
Target:  5'- uUCCAUCGAUGCAGUACUCUGCCACGCg -3'
miRNA:   3'- -AGGUAGCUACGUCAUGAGACGGUGCG- -5'
24678 5' -52.6 NC_005264.1 + 110367 0.67 0.966372
Target:  5'- aCCAgguuUCGGUaGC-GUuuUCUGCUACGCg -3'
miRNA:   3'- aGGU----AGCUA-CGuCAugAGACGGUGCG- -5'
24678 5' -52.6 NC_005264.1 + 123024 0.72 0.820308
Target:  5'- cUCCAUCuagGCGGaUGCg-UGCCGCGCa -3'
miRNA:   3'- -AGGUAGcuaCGUC-AUGagACGGUGCG- -5'
24678 5' -52.6 NC_005264.1 + 123844 0.67 0.966372
Target:  5'- aUCCGUCGucgcucUGCAGgugUUCcGCCAgGCg -3'
miRNA:   3'- -AGGUAGCu-----ACGUCau-GAGaCGGUgCG- -5'
24678 5' -52.6 NC_005264.1 + 125149 0.78 0.499474
Target:  5'- gUCCAUCaGGUGCGGgaggGCgaggGCCGCGCg -3'
miRNA:   3'- -AGGUAG-CUACGUCa---UGaga-CGGUGCG- -5'
24678 5' -52.6 NC_005264.1 + 125436 0.75 0.653352
Target:  5'- cCCAgCGAcgagcgauuguUGCGGUccCUCUGCCGCGCc -3'
miRNA:   3'- aGGUaGCU-----------ACGUCAu-GAGACGGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.