Results 1 - 20 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24678 | 5' | -52.6 | NC_005264.1 | + | 162815 | 0.68 | 0.951602 |
Target: 5'- gCCGUgGGUGCGGggcgcaguUUCUGUCGCGa -3' miRNA: 3'- aGGUAgCUACGUCau------GAGACGGUGCg -5' |
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24678 | 5' | -52.6 | NC_005264.1 | + | 160939 | 0.66 | 0.981675 |
Target: 5'- aUCCcgcaGUCGcgGCGGggucuguagcuUUCUGCCACGa -3' miRNA: 3'- -AGG----UAGCuaCGUCau---------GAGACGGUGCg -5' |
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24678 | 5' | -52.6 | NC_005264.1 | + | 157689 | 0.69 | 0.904208 |
Target: 5'- uUCgGaCGAUGCGGcGCg--GCCGCGCa -3' miRNA: 3'- -AGgUaGCUACGUCaUGagaCGGUGCG- -5' |
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24678 | 5' | -52.6 | NC_005264.1 | + | 154826 | 0.69 | 0.933013 |
Target: 5'- gCCGUCGugGCGGgcgcCUCUGCCGgcccCGCa -3' miRNA: 3'- aGGUAGCuaCGUCau--GAGACGGU----GCG- -5' |
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24678 | 5' | -52.6 | NC_005264.1 | + | 152377 | 0.66 | 0.984047 |
Target: 5'- -aCAUUGAcggcgGCGGUcACUCUGCCcuCGUc -3' miRNA: 3'- agGUAGCUa----CGUCA-UGAGACGGu-GCG- -5' |
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24678 | 5' | -52.6 | NC_005264.1 | + | 148122 | 0.67 | 0.959448 |
Target: 5'- aUCGUCGGgucgggGCcguuaaAGUGCUCUGCU-CGCg -3' miRNA: 3'- aGGUAGCUa-----CG------UCAUGAGACGGuGCG- -5' |
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24678 | 5' | -52.6 | NC_005264.1 | + | 147894 | 0.66 | 0.984047 |
Target: 5'- -aCGcgCGAUGCAG-ACUgugaugGCCGCGCu -3' miRNA: 3'- agGUa-GCUACGUCaUGAga----CGGUGCG- -5' |
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24678 | 5' | -52.6 | NC_005264.1 | + | 146925 | 0.69 | 0.904208 |
Target: 5'- gCUAUCGggGCAGUAgUUcGUgGCGCa -3' miRNA: 3'- aGGUAGCuaCGUCAUgAGaCGgUGCG- -5' |
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24678 | 5' | -52.6 | NC_005264.1 | + | 143724 | 0.66 | 0.975126 |
Target: 5'- cCCAUC---GUAGUGCUCgucuCCGCGCc -3' miRNA: 3'- aGGUAGcuaCGUCAUGAGac--GGUGCG- -5' |
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24678 | 5' | -52.6 | NC_005264.1 | + | 142954 | 0.7 | 0.876784 |
Target: 5'- uUCCGccgCGAauacuUGCGGUGCauaagGCCGCGCa -3' miRNA: 3'- -AGGUa--GCU-----ACGUCAUGaga--CGGUGCG- -5' |
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24678 | 5' | -52.6 | NC_005264.1 | + | 132579 | 0.74 | 0.694813 |
Target: 5'- gCCGcgcuacacuUCGGUGCAGcguggcaccGCUUUGCCGCGCu -3' miRNA: 3'- aGGU---------AGCUACGUCa--------UGAGACGGUGCG- -5' |
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24678 | 5' | -52.6 | NC_005264.1 | + | 126727 | 0.69 | 0.916473 |
Target: 5'- aUCGUCGGccgGCgAGUACcaUCUGCCAgcCGCg -3' miRNA: 3'- aGGUAGCUa--CG-UCAUG--AGACGGU--GCG- -5' |
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24678 | 5' | -52.6 | NC_005264.1 | + | 125436 | 0.75 | 0.653352 |
Target: 5'- cCCAgCGAcgagcgauuguUGCGGUccCUCUGCCGCGCc -3' miRNA: 3'- aGGUaGCU-----------ACGUCAu-GAGACGGUGCG- -5' |
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24678 | 5' | -52.6 | NC_005264.1 | + | 125149 | 0.78 | 0.499474 |
Target: 5'- gUCCAUCaGGUGCGGgaggGCgaggGCCGCGCg -3' miRNA: 3'- -AGGUAG-CUACGUCa---UGaga-CGGUGCG- -5' |
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24678 | 5' | -52.6 | NC_005264.1 | + | 123844 | 0.67 | 0.966372 |
Target: 5'- aUCCGUCGucgcucUGCAGgugUUCcGCCAgGCg -3' miRNA: 3'- -AGGUAGCu-----ACGUCau-GAGaCGGUgCG- -5' |
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24678 | 5' | -52.6 | NC_005264.1 | + | 123024 | 0.72 | 0.820308 |
Target: 5'- cUCCAUCuagGCGGaUGCg-UGCCGCGCa -3' miRNA: 3'- -AGGUAGcuaCGUC-AUGagACGGUGCG- -5' |
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24678 | 5' | -52.6 | NC_005264.1 | + | 110367 | 0.67 | 0.966372 |
Target: 5'- aCCAgguuUCGGUaGC-GUuuUCUGCUACGCg -3' miRNA: 3'- aGGU----AGCUA-CGuCAugAGACGGUGCG- -5' |
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24678 | 5' | -52.6 | NC_005264.1 | + | 110301 | 1.14 | 0.003233 |
Target: 5'- uUCCAUCGAUGCAGUACUCUGCCACGCg -3' miRNA: 3'- -AGGUAGCUACGUCAUGAGACGGUGCG- -5' |
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24678 | 5' | -52.6 | NC_005264.1 | + | 108696 | 0.67 | 0.972417 |
Target: 5'- aCCGUCGAUGUAGUcggcaccgACcCcGgCGCGCu -3' miRNA: 3'- aGGUAGCUACGUCA--------UGaGaCgGUGCG- -5' |
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24678 | 5' | -52.6 | NC_005264.1 | + | 107986 | 0.74 | 0.705066 |
Target: 5'- aCCGUgGAUGCGGgcgGCUCccagGUCACGUc -3' miRNA: 3'- aGGUAgCUACGUCa--UGAGa---CGGUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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