Results 21 - 40 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24678 | 5' | -52.6 | NC_005264.1 | + | 103932 | 0.67 | 0.966372 |
Target: 5'- gCCAUCGAggagGCGGca-UCcGCUAUGCg -3' miRNA: 3'- aGGUAGCUa---CGUCaugAGaCGGUGCG- -5' |
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24678 | 5' | -52.6 | NC_005264.1 | + | 93037 | 0.66 | 0.984047 |
Target: 5'- gUCCGcgcCGaAUGC-GUGCUgcugcgCUGCCAUGCg -3' miRNA: 3'- -AGGUa--GC-UACGuCAUGA------GACGGUGCG- -5' |
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24678 | 5' | -52.6 | NC_005264.1 | + | 89760 | 0.7 | 0.897709 |
Target: 5'- cCCGUCGAaGUAGaga--UGCCGCGCg -3' miRNA: 3'- aGGUAGCUaCGUCaugagACGGUGCG- -5' |
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24678 | 5' | -52.6 | NC_005264.1 | + | 87100 | 0.68 | 0.938029 |
Target: 5'- gUCAUCGcUGguGaACcgcaaCUGCCACGCg -3' miRNA: 3'- aGGUAGCuACguCaUGa----GACGGUGCG- -5' |
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24678 | 5' | -52.6 | NC_005264.1 | + | 85113 | 0.67 | 0.966372 |
Target: 5'- gUCCcUCGgcGCAuUGCgagacaaaUGCCACGCg -3' miRNA: 3'- -AGGuAGCuaCGUcAUGag------ACGGUGCG- -5' |
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24678 | 5' | -52.6 | NC_005264.1 | + | 84455 | 0.67 | 0.969501 |
Target: 5'- uUCCAgauugcCGcGUGCaucgGGUGCggCUGCUACGCu -3' miRNA: 3'- -AGGUa-----GC-UACG----UCAUGa-GACGGUGCG- -5' |
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24678 | 5' | -52.6 | NC_005264.1 | + | 76667 | 0.68 | 0.954853 |
Target: 5'- gCCAcCGGUGCGGcagaagaUAcCUCUGCCcagcuugGCGCg -3' miRNA: 3'- aGGUaGCUACGUC-------AU-GAGACGG-------UGCG- -5' |
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24678 | 5' | -52.6 | NC_005264.1 | + | 75309 | 0.74 | 0.694813 |
Target: 5'- cCCA-CGcUGCAGca-UCUGCCGCGCg -3' miRNA: 3'- aGGUaGCuACGUCaugAGACGGUGCG- -5' |
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24678 | 5' | -52.6 | NC_005264.1 | + | 73095 | 0.66 | 0.975126 |
Target: 5'- uUCCAUgGAcGUAGUACgaguuUCUGuCUACGUc -3' miRNA: 3'- -AGGUAgCUaCGUCAUG-----AGAC-GGUGCG- -5' |
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24678 | 5' | -52.6 | NC_005264.1 | + | 59897 | 0.66 | 0.975126 |
Target: 5'- -gCAUCGcgGgcCAGUGCcCUGUgGCGCa -3' miRNA: 3'- agGUAGCuaC--GUCAUGaGACGgUGCG- -5' |
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24678 | 5' | -52.6 | NC_005264.1 | + | 58630 | 0.69 | 0.904208 |
Target: 5'- cCCGUgCGAcGC-GUGCUCUGCgGCGa -3' miRNA: 3'- aGGUA-GCUaCGuCAUGAGACGgUGCg -5' |
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24678 | 5' | -52.6 | NC_005264.1 | + | 58451 | 0.66 | 0.982088 |
Target: 5'- uUCCAgguugUCGGgcgcCAGccuaUCUGCCGCGCg -3' miRNA: 3'- -AGGU-----AGCUac--GUCaug-AGACGGUGCG- -5' |
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24678 | 5' | -52.6 | NC_005264.1 | + | 52769 | 0.69 | 0.909849 |
Target: 5'- uUCCGcuacgCGGUcGUGGUACUCgcguacugucgcuUGCCGCGCc -3' miRNA: 3'- -AGGUa----GCUA-CGUCAUGAG-------------ACGGUGCG- -5' |
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24678 | 5' | -52.6 | NC_005264.1 | + | 52552 | 0.69 | 0.927208 |
Target: 5'- -gCAUCGAUggaauggGCGGUGCggauggcacggCUGCCuACGCg -3' miRNA: 3'- agGUAGCUA-------CGUCAUGa----------GACGG-UGCG- -5' |
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24678 | 5' | -52.6 | NC_005264.1 | + | 46580 | 0.66 | 0.982088 |
Target: 5'- uUCCAagUCGcgcGUGCGGagGCUCUGuCCcUGCg -3' miRNA: 3'- -AGGU--AGC---UACGUCa-UGAGAC-GGuGCG- -5' |
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24678 | 5' | -52.6 | NC_005264.1 | + | 43789 | 0.68 | 0.951602 |
Target: 5'- gCCGUgGGUGCGGggcgcaguUUCUGUCGCGa -3' miRNA: 3'- aGGUAgCUACGUCau------GAGACGGUGCg -5' |
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24678 | 5' | -52.6 | NC_005264.1 | + | 41913 | 0.67 | 0.971851 |
Target: 5'- aUCCgcaGUCGcgGCGGggucuguagcuUUCUGCCACGa -3' miRNA: 3'- -AGG---UAGCuaCGUCau---------GAGACGGUGCg -5' |
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24678 | 5' | -52.6 | NC_005264.1 | + | 39721 | 0.67 | 0.959448 |
Target: 5'- cCCGUUGGccaaGUAGUACUCgaUGCCcccggaGCGCa -3' miRNA: 3'- aGGUAGCUa---CGUCAUGAG--ACGG------UGCG- -5' |
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24678 | 5' | -52.6 | NC_005264.1 | + | 36686 | 0.7 | 0.883993 |
Target: 5'- cUCUggCGcaaugGCGG-AUUCUGCCGCGCa -3' miRNA: 3'- -AGGuaGCua---CGUCaUGAGACGGUGCG- -5' |
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24678 | 5' | -52.6 | NC_005264.1 | + | 35800 | 0.69 | 0.933013 |
Target: 5'- gCCGUCGugGCGGgcgcCUCUGCCGgcccCGCa -3' miRNA: 3'- aGGUAGCuaCGUCau--GAGACGGU----GCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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