Results 1 - 20 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24678 | 5' | -52.6 | NC_005264.1 | + | 110301 | 1.14 | 0.003233 |
Target: 5'- uUCCAUCGAUGCAGUACUCUGCCACGCg -3' miRNA: 3'- -AGGUAGCUACGUCAUGAGACGGUGCG- -5' |
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24678 | 5' | -52.6 | NC_005264.1 | + | 84455 | 0.67 | 0.969501 |
Target: 5'- uUCCAgauugcCGcGUGCaucgGGUGCggCUGCUACGCu -3' miRNA: 3'- -AGGUa-----GC-UACG----UCAUGa-GACGGUGCG- -5' |
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24678 | 5' | -52.6 | NC_005264.1 | + | 12782 | 0.67 | 0.972417 |
Target: 5'- -aCAaCGAUGCGGUca--UGCCugGCa -3' miRNA: 3'- agGUaGCUACGUCAugagACGGugCG- -5' |
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24678 | 5' | -52.6 | NC_005264.1 | + | 147894 | 0.66 | 0.984047 |
Target: 5'- -aCGcgCGAUGCAG-ACUgugaugGCCGCGCu -3' miRNA: 3'- agGUa-GCUACGUCaUGAga----CGGUGCG- -5' |
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24678 | 5' | -52.6 | NC_005264.1 | + | 142954 | 0.7 | 0.876784 |
Target: 5'- uUCCGccgCGAauacuUGCGGUGCauaagGCCGCGCa -3' miRNA: 3'- -AGGUa--GCU-----ACGUCAUGaga--CGGUGCG- -5' |
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24678 | 5' | -52.6 | NC_005264.1 | + | 36686 | 0.7 | 0.883993 |
Target: 5'- cUCUggCGcaaugGCGG-AUUCUGCCGCGCa -3' miRNA: 3'- -AGGuaGCua---CGUCaUGAGACGGUGCG- -5' |
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24678 | 5' | -52.6 | NC_005264.1 | + | 9920 | 0.69 | 0.916473 |
Target: 5'- aCUcgCGAcUGCGG-GCUUUGCgGCGCg -3' miRNA: 3'- aGGuaGCU-ACGUCaUGAGACGgUGCG- -5' |
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24678 | 5' | -52.6 | NC_005264.1 | + | 154826 | 0.69 | 0.933013 |
Target: 5'- gCCGUCGugGCGGgcgcCUCUGCCGgcccCGCa -3' miRNA: 3'- aGGUAGCuaCGUCau--GAGACGGU----GCG- -5' |
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24678 | 5' | -52.6 | NC_005264.1 | + | 76667 | 0.68 | 0.954853 |
Target: 5'- gCCAcCGGUGCGGcagaagaUAcCUCUGCCcagcuugGCGCg -3' miRNA: 3'- aGGUaGCUACGUC-------AU-GAGACGG-------UGCG- -5' |
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24678 | 5' | -52.6 | NC_005264.1 | + | 123844 | 0.67 | 0.966372 |
Target: 5'- aUCCGUCGucgcucUGCAGgugUUCcGCCAgGCg -3' miRNA: 3'- -AGGUAGCu-----ACGUCau-GAGaCGGUgCG- -5' |
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24678 | 5' | -52.6 | NC_005264.1 | + | 103932 | 0.67 | 0.966372 |
Target: 5'- gCCAUCGAggagGCGGca-UCcGCUAUGCg -3' miRNA: 3'- aGGUAGCUa---CGUCaugAGaCGGUGCG- -5' |
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24678 | 5' | -52.6 | NC_005264.1 | + | 162815 | 0.68 | 0.951602 |
Target: 5'- gCCGUgGGUGCGGggcgcaguUUCUGUCGCGa -3' miRNA: 3'- aGGUAgCUACGUCau------GAGACGGUGCg -5' |
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24678 | 5' | -52.6 | NC_005264.1 | + | 125149 | 0.78 | 0.499474 |
Target: 5'- gUCCAUCaGGUGCGGgaggGCgaggGCCGCGCg -3' miRNA: 3'- -AGGUAG-CUACGUCa---UGaga-CGGUGCG- -5' |
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24678 | 5' | -52.6 | NC_005264.1 | + | 85113 | 0.67 | 0.966372 |
Target: 5'- gUCCcUCGgcGCAuUGCgagacaaaUGCCACGCg -3' miRNA: 3'- -AGGuAGCuaCGUcAUGag------ACGGUGCG- -5' |
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24678 | 5' | -52.6 | NC_005264.1 | + | 4238 | 0.72 | 0.783956 |
Target: 5'- uUCCAUCucUGCGGagcCUCUugccGCCGCGCa -3' miRNA: 3'- -AGGUAGcuACGUCau-GAGA----CGGUGCG- -5' |
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24678 | 5' | -52.6 | NC_005264.1 | + | 87100 | 0.68 | 0.938029 |
Target: 5'- gUCAUCGcUGguGaACcgcaaCUGCCACGCg -3' miRNA: 3'- aGGUAGCuACguCaUGa----GACGGUGCG- -5' |
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24678 | 5' | -52.6 | NC_005264.1 | + | 110367 | 0.67 | 0.966372 |
Target: 5'- aCCAgguuUCGGUaGC-GUuuUCUGCUACGCg -3' miRNA: 3'- aGGU----AGCUA-CGuCAugAGACGGUGCG- -5' |
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24678 | 5' | -52.6 | NC_005264.1 | + | 6722 | 0.67 | 0.972417 |
Target: 5'- gUCCuagCGucGCGGUACUCcGCgGCGUg -3' miRNA: 3'- -AGGua-GCuaCGUCAUGAGaCGgUGCG- -5' |
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24678 | 5' | -52.6 | NC_005264.1 | + | 8441 | 0.72 | 0.820308 |
Target: 5'- gCCAUCGucugGCGGaGCUCUGaCCAUaGCa -3' miRNA: 3'- aGGUAGCua--CGUCaUGAGAC-GGUG-CG- -5' |
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24678 | 5' | -52.6 | NC_005264.1 | + | 52769 | 0.69 | 0.909849 |
Target: 5'- uUCCGcuacgCGGUcGUGGUACUCgcguacugucgcuUGCCGCGCc -3' miRNA: 3'- -AGGUa----GCUA-CGUCAUGAG-------------ACGGUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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