miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24678 5' -52.6 NC_005264.1 + 27389 0.74 0.705066
Target:  5'- gUUUAUCG-UGCAuGUACUCUaCCGCGCa -3'
miRNA:   3'- -AGGUAGCuACGU-CAUGAGAcGGUGCG- -5'
24678 5' -52.6 NC_005264.1 + 52552 0.69 0.927208
Target:  5'- -gCAUCGAUggaauggGCGGUGCggauggcacggCUGCCuACGCg -3'
miRNA:   3'- agGUAGCUA-------CGUCAUGa----------GACGG-UGCG- -5'
24678 5' -52.6 NC_005264.1 + 126727 0.69 0.916473
Target:  5'- aUCGUCGGccgGCgAGUACcaUCUGCCAgcCGCg -3'
miRNA:   3'- aGGUAGCUa--CG-UCAUG--AGACGGU--GCG- -5'
24678 5' -52.6 NC_005264.1 + 58630 0.69 0.904208
Target:  5'- cCCGUgCGAcGC-GUGCUCUGCgGCGa -3'
miRNA:   3'- aGGUA-GCUaCGuCAUGAGACGgUGCg -5'
24678 5' -52.6 NC_005264.1 + 157689 0.69 0.904208
Target:  5'- uUCgGaCGAUGCGGcGCg--GCCGCGCa -3'
miRNA:   3'- -AGgUaGCUACGUCaUGagaCGGUGCG- -5'
24678 5' -52.6 NC_005264.1 + 146925 0.69 0.904208
Target:  5'- gCUAUCGggGCAGUAgUUcGUgGCGCa -3'
miRNA:   3'- aGGUAGCuaCGUCAUgAGaCGgUGCG- -5'
24678 5' -52.6 NC_005264.1 + 89760 0.7 0.897709
Target:  5'- cCCGUCGAaGUAGaga--UGCCGCGCg -3'
miRNA:   3'- aGGUAGCUaCGUCaugagACGGUGCG- -5'
24678 5' -52.6 NC_005264.1 + 123024 0.72 0.820308
Target:  5'- cUCCAUCuagGCGGaUGCg-UGCCGCGCa -3'
miRNA:   3'- -AGGUAGcuaCGUC-AUGagACGGUGCG- -5'
24678 5' -52.6 NC_005264.1 + 107986 0.74 0.705066
Target:  5'- aCCGUgGAUGCGGgcgGCUCccagGUCACGUc -3'
miRNA:   3'- aGGUAgCUACGUCa--UGAGa---CGGUGCG- -5'
24678 5' -52.6 NC_005264.1 + 35800 0.69 0.933013
Target:  5'- gCCGUCGugGCGGgcgcCUCUGCCGgcccCGCa -3'
miRNA:   3'- aGGUAGCuaCGUCau--GAGACGGU----GCG- -5'
24678 5' -52.6 NC_005264.1 + 43789 0.68 0.951602
Target:  5'- gCCGUgGGUGCGGggcgcaguUUCUGUCGCGa -3'
miRNA:   3'- aGGUAgCUACGUCau------GAGACGGUGCg -5'
24678 5' -52.6 NC_005264.1 + 22300 0.68 0.951602
Target:  5'- gUCGUCGGUaggauaGCuGUAgUCUGgCGCGCg -3'
miRNA:   3'- aGGUAGCUA------CGuCAUgAGACgGUGCG- -5'
24678 5' -52.6 NC_005264.1 + 93037 0.66 0.984047
Target:  5'- gUCCGcgcCGaAUGC-GUGCUgcugcgCUGCCAUGCg -3'
miRNA:   3'- -AGGUa--GC-UACGuCAUGA------GACGGUGCG- -5'
24678 5' -52.6 NC_005264.1 + 58451 0.66 0.982088
Target:  5'- uUCCAgguugUCGGgcgcCAGccuaUCUGCCGCGCg -3'
miRNA:   3'- -AGGU-----AGCUac--GUCaug-AGACGGUGCG- -5'
24678 5' -52.6 NC_005264.1 + 73095 0.66 0.975126
Target:  5'- uUCCAUgGAcGUAGUACgaguuUCUGuCUACGUc -3'
miRNA:   3'- -AGGUAgCUaCGUCAUG-----AGAC-GGUGCG- -5'
24678 5' -52.6 NC_005264.1 + 143724 0.66 0.975126
Target:  5'- cCCAUC---GUAGUGCUCgucuCCGCGCc -3'
miRNA:   3'- aGGUAGcuaCGUCAUGAGac--GGUGCG- -5'
24678 5' -52.6 NC_005264.1 + 41913 0.67 0.971851
Target:  5'- aUCCgcaGUCGcgGCGGggucuguagcuUUCUGCCACGa -3'
miRNA:   3'- -AGG---UAGCuaCGUCau---------GAGACGGUGCg -5'
24678 5' -52.6 NC_005264.1 + 4818 0.67 0.966372
Target:  5'- aUCCGUCGucgcucUGCAGgugUUCcGCCAgGCg -3'
miRNA:   3'- -AGGUAGCu-----ACGUCau-GAGaCGGUgCG- -5'
24678 5' -52.6 NC_005264.1 + 148122 0.67 0.959448
Target:  5'- aUCGUCGGgucgggGCcguuaaAGUGCUCUGCU-CGCg -3'
miRNA:   3'- aGGUAGCUa-----CG------UCAUGAGACGGuGCG- -5'
24678 5' -52.6 NC_005264.1 + 14632 0.68 0.955643
Target:  5'- -gCAUCGAUGCgaAGUGCUagacgGCCGC-Ca -3'
miRNA:   3'- agGUAGCUACG--UCAUGAga---CGGUGcG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.