miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24679 3' -59.3 NC_005264.1 + 103044 0.66 0.792546
Target:  5'- -aCGUACggcucCGCGGCggaCAcGGCCGUGGa -3'
miRNA:   3'- gcGCAUGa----GCGCCGag-GU-CCGGCAUU- -5'
24679 3' -59.3 NC_005264.1 + 122159 0.66 0.77448
Target:  5'- aCGCGUGCUCGacgccgaaCGGCgCCAGcGuaGUAAg -3'
miRNA:   3'- -GCGCAUGAGC--------GCCGaGGUC-CggCAUU- -5'
24679 3' -59.3 NC_005264.1 + 20290 0.67 0.736949
Target:  5'- uGCGcGCUUGCGGCcCCgagGGGCUGa-- -3'
miRNA:   3'- gCGCaUGAGCGCCGaGG---UCCGGCauu -5'
24679 3' -59.3 NC_005264.1 + 119436 0.67 0.736949
Target:  5'- gGCGggcgauCUCGCuGC-CCAGGCCGc-- -3'
miRNA:   3'- gCGCau----GAGCGcCGaGGUCCGGCauu -5'
24679 3' -59.3 NC_005264.1 + 98427 0.67 0.717623
Target:  5'- uCGcCGUGCcCGCGGCgucggCCuuGGCCGg-- -3'
miRNA:   3'- -GC-GCAUGaGCGCCGa----GGu-CCGGCauu -5'
24679 3' -59.3 NC_005264.1 + 26117 0.67 0.717623
Target:  5'- cCGCGcgGCUCGUGGCg-CGGcGCCGa-- -3'
miRNA:   3'- -GCGCa-UGAGCGCCGagGUC-CGGCauu -5'
24679 3' -59.3 NC_005264.1 + 11854 0.67 0.714698
Target:  5'- aCGCGgcccgucgccgccACUCGCGaGCUCagagccgagccgcgaGGGCCGUGGg -3'
miRNA:   3'- -GCGCa------------UGAGCGC-CGAGg--------------UCCGGCAUU- -5'
24679 3' -59.3 NC_005264.1 + 130880 0.67 0.714698
Target:  5'- aCGCGgcccgucgccgccACUCGCGaGCUCagagccgagccgcgaGGGCCGUGGg -3'
miRNA:   3'- -GCGCa------------UGAGCGC-CGAGg--------------UCCGGCAUU- -5'
24679 3' -59.3 NC_005264.1 + 55635 0.67 0.70785
Target:  5'- cCGCGUACccauaCGCcggaacaGCUCCAGGCCa--- -3'
miRNA:   3'- -GCGCAUGa----GCGc------CGAGGUCCGGcauu -5'
24679 3' -59.3 NC_005264.1 + 40634 0.67 0.70785
Target:  5'- cCGUGUACUUGUGGCacuUCCuuGGCUGc-- -3'
miRNA:   3'- -GCGCAUGAGCGCCG---AGGu-CCGGCauu -5'
24679 3' -59.3 NC_005264.1 + 112975 0.67 0.705888
Target:  5'- aCGCGUauacGCUgCGCGGCgucaccagggccCCGGuGCCGUGu -3'
miRNA:   3'- -GCGCA----UGA-GCGCCGa-----------GGUC-CGGCAUu -5'
24679 3' -59.3 NC_005264.1 + 84955 0.67 0.698016
Target:  5'- cCGgGUGCUCGCuuGCggCCAGGCUGc-- -3'
miRNA:   3'- -GCgCAUGAGCGc-CGa-GGUCCGGCauu -5'
24679 3' -59.3 NC_005264.1 + 142789 0.68 0.678196
Target:  5'- aCGCGggGCcgCGUGGCgacaugCCAGGCCa--- -3'
miRNA:   3'- -GCGCa-UGa-GCGCCGa-----GGUCCGGcauu -5'
24679 3' -59.3 NC_005264.1 + 84132 0.68 0.678196
Target:  5'- uCGCGgcaGCUCGCGaGCcCCGGGaaGUGGu -3'
miRNA:   3'- -GCGCa--UGAGCGC-CGaGGUCCggCAUU- -5'
24679 3' -59.3 NC_005264.1 + 48196 0.68 0.658231
Target:  5'- aGCGUGCUCGUucgucuGUgCCGGGCCGa-- -3'
miRNA:   3'- gCGCAUGAGCGc-----CGaGGUCCGGCauu -5'
24679 3' -59.3 NC_005264.1 + 149953 0.68 0.658231
Target:  5'- gGCG-GCUCGaCGGUccgUCCGGGUCGUc- -3'
miRNA:   3'- gCGCaUGAGC-GCCG---AGGUCCGGCAuu -5'
24679 3' -59.3 NC_005264.1 + 85872 0.68 0.638185
Target:  5'- gGCGUGCUUGUGaccaCCgAGGCCGUGAa -3'
miRNA:   3'- gCGCAUGAGCGCcga-GG-UCCGGCAUU- -5'
24679 3' -59.3 NC_005264.1 + 57992 0.68 0.632165
Target:  5'- gCGCGgcgGC-CGUGGCUCagcggccccggcggaCAGGCCGUc- -3'
miRNA:   3'- -GCGCa--UGaGCGCCGAG---------------GUCCGGCAuu -5'
24679 3' -59.3 NC_005264.1 + 116431 0.69 0.618121
Target:  5'- gGCGUGCagccUCGCGGCggaCCuGGCCcUGAc -3'
miRNA:   3'- gCGCAUG----AGCGCCGa--GGuCCGGcAUU- -5'
24679 3' -59.3 NC_005264.1 + 8918 0.69 0.575192
Target:  5'- gCGCGUcuucagguACUCGCGGaacaguuucucggcCUUCGGGCCGg-- -3'
miRNA:   3'- -GCGCA--------UGAGCGCC--------------GAGGUCCGGCauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.