miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24679 5' -52.7 NC_005264.1 + 53562 0.66 0.979954
Target:  5'- ---aAGUCGUUGuCGCGCaGAGCGGCg- -3'
miRNA:   3'- acaaUCGGCGAU-GCGUG-CUCGUUGag -5'
24679 5' -52.7 NC_005264.1 + 83250 0.66 0.977613
Target:  5'- ----cGCCGCUgauGCGCugGcGCGGCg- -3'
miRNA:   3'- acaauCGGCGA---UGCGugCuCGUUGag -5'
24679 5' -52.7 NC_005264.1 + 162689 0.66 0.977613
Target:  5'- gGUcGGCgCGCUGCGCGCcGGCGu--- -3'
miRNA:   3'- aCAaUCG-GCGAUGCGUGcUCGUugag -5'
24679 5' -52.7 NC_005264.1 + 83716 0.66 0.977613
Target:  5'- gUGgcGGCgGCUAgGUACGcGGCGGCa- -3'
miRNA:   3'- -ACaaUCGgCGAUgCGUGC-UCGUUGag -5'
24679 5' -52.7 NC_005264.1 + 94673 0.66 0.977613
Target:  5'- --gUAGCCGCgGCGgGCGccGCAACg- -3'
miRNA:   3'- acaAUCGGCGaUGCgUGCu-CGUUGag -5'
24679 5' -52.7 NC_005264.1 + 13164 0.66 0.977613
Target:  5'- ----cGCCGCUAUGUcuuacuacaccaACGAGCAAUc- -3'
miRNA:   3'- acaauCGGCGAUGCG------------UGCUCGUUGag -5'
24679 5' -52.7 NC_005264.1 + 63919 0.66 0.977613
Target:  5'- aGgu-GCCGUaUGCGUcgGCGGGguGCUCg -3'
miRNA:   3'- aCaauCGGCG-AUGCG--UGCUCguUGAG- -5'
24679 5' -52.7 NC_005264.1 + 48096 0.66 0.977613
Target:  5'- ---cGGCCGCgcggguucUGCACGcgcGCGGCUCa -3'
miRNA:   3'- acaaUCGGCGau------GCGUGCu--CGUUGAG- -5'
24679 5' -52.7 NC_005264.1 + 43663 0.66 0.977613
Target:  5'- gGUcGGCgCGCUGCGCGCcGGCGu--- -3'
miRNA:   3'- aCAaUCG-GCGAUGCGUGcUCGUugag -5'
24679 5' -52.7 NC_005264.1 + 61809 0.66 0.977368
Target:  5'- ---gGGCCGCgggcauCGC-CGGGCAgugccugGCUCg -3'
miRNA:   3'- acaaUCGGCGau----GCGuGCUCGU-------UGAG- -5'
24679 5' -52.7 NC_005264.1 + 56579 0.66 0.975077
Target:  5'- cGUUAaauccGCCGUcagcAgGCGCGAGCGcCUCg -3'
miRNA:   3'- aCAAU-----CGGCGa---UgCGUGCUCGUuGAG- -5'
24679 5' -52.7 NC_005264.1 + 43664 0.66 0.975077
Target:  5'- cGUUGGCCGCugaaccguucuUugGUGCcGGCGGCa- -3'
miRNA:   3'- aCAAUCGGCG-----------AugCGUGcUCGUUGag -5'
24679 5' -52.7 NC_005264.1 + 92715 0.66 0.974812
Target:  5'- ----uGCCGC-ACGCGgGAguacgcgGCAGCUCg -3'
miRNA:   3'- acaauCGGCGaUGCGUgCU-------CGUUGAG- -5'
24679 5' -52.7 NC_005264.1 + 34762 0.66 0.972337
Target:  5'- ----cGCCGCUGuCGCuacacgaagAUGAGCcGCUCa -3'
miRNA:   3'- acaauCGGCGAU-GCG---------UGCUCGuUGAG- -5'
24679 5' -52.7 NC_005264.1 + 61438 0.66 0.972337
Target:  5'- cGgcGGcCCGCUccucgGCGC-CGAGUuGCUCg -3'
miRNA:   3'- aCaaUC-GGCGA-----UGCGuGCUCGuUGAG- -5'
24679 5' -52.7 NC_005264.1 + 123107 0.66 0.972337
Target:  5'- ---gGGCUGU--UGCACGGGCGGCgUCg -3'
miRNA:   3'- acaaUCGGCGauGCGUGCUCGUUG-AG- -5'
24679 5' -52.7 NC_005264.1 + 134471 0.66 0.972337
Target:  5'- ----cGCCGCUACGUuuauuCGGGCAGg-- -3'
miRNA:   3'- acaauCGGCGAUGCGu----GCUCGUUgag -5'
24679 5' -52.7 NC_005264.1 + 111305 0.66 0.972337
Target:  5'- ---gGGCUGCUGCGgAUGAuaaaGCAccuGCUCg -3'
miRNA:   3'- acaaUCGGCGAUGCgUGCU----CGU---UGAG- -5'
24679 5' -52.7 NC_005264.1 + 4080 0.66 0.972337
Target:  5'- ---gGGCUGU--UGCACGGGCGGCgUCg -3'
miRNA:   3'- acaaUCGGCGauGCGUGCUCGUUG-AG- -5'
24679 5' -52.7 NC_005264.1 + 66553 0.66 0.972337
Target:  5'- ----cGCCGagGCGCACGAGCGcgUCu -3'
miRNA:   3'- acaauCGGCgaUGCGUGCUCGUugAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.