miRNA display CGI


Results 1 - 20 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24680 3' -47.7 NC_005264.1 + 84260 0.66 0.999905
Target:  5'- --cACGCGCUgcguUGCUGCGAcacagcaaaAGcgACGCg -3'
miRNA:   3'- cgaUGCGUGA----GUGAUGCU---------UCuaUGCG- -5'
24680 3' -47.7 NC_005264.1 + 69586 0.66 0.999905
Target:  5'- gGUUGCGCGaaCGCgccgACGAGG--GCGCc -3'
miRNA:   3'- -CGAUGCGUgaGUGa---UGCUUCuaUGCG- -5'
24680 3' -47.7 NC_005264.1 + 82329 0.66 0.999905
Target:  5'- cGUUGCGCAC-CGCgGCGAuGuucuCGCu -3'
miRNA:   3'- -CGAUGCGUGaGUGaUGCUuCuau-GCG- -5'
24680 3' -47.7 NC_005264.1 + 131010 0.66 0.999905
Target:  5'- uGCcGCGCGCggCACgGCaGAG-UACGCg -3'
miRNA:   3'- -CGaUGCGUGa-GUGaUGcUUCuAUGCG- -5'
24680 3' -47.7 NC_005264.1 + 19108 0.66 0.999905
Target:  5'- cGCggcgGCGCggagACgagCACUACGAugGGGcUACGUg -3'
miRNA:   3'- -CGa---UGCG----UGa--GUGAUGCU--UCU-AUGCG- -5'
24680 3' -47.7 NC_005264.1 + 92100 0.66 0.999905
Target:  5'- --gGCGCAUuucgUCGCUGCGgcGGcacacaGCGCa -3'
miRNA:   3'- cgaUGCGUG----AGUGAUGCuuCUa-----UGCG- -5'
24680 3' -47.7 NC_005264.1 + 80183 0.66 0.999905
Target:  5'- cCUGCGCGCgguCUugaaaGGAGAgGCGCg -3'
miRNA:   3'- cGAUGCGUGaguGAug---CUUCUaUGCG- -5'
24680 3' -47.7 NC_005264.1 + 145173 0.66 0.999905
Target:  5'- gGCUGCGC-CUgagGCUACGAuauacaAUugGCg -3'
miRNA:   3'- -CGAUGCGuGAg--UGAUGCUuc----UAugCG- -5'
24680 3' -47.7 NC_005264.1 + 11983 0.66 0.999905
Target:  5'- uGCcGCGCGCggCACgGCaGAG-UACGCg -3'
miRNA:   3'- -CGaUGCGUGa-GUGaUGcUUCuAUGCG- -5'
24680 3' -47.7 NC_005264.1 + 112566 0.66 0.999903
Target:  5'- cGCUACGCACgagcaacucggaaUCGCcgccGCGGcAGGUGCa- -3'
miRNA:   3'- -CGAUGCGUG-------------AGUGa---UGCU-UCUAUGcg -5'
24680 3' -47.7 NC_005264.1 + 96951 0.66 0.999903
Target:  5'- --aGCGaCGCUCGCUcuuUGAuguucucguuuauAGGUGCGCg -3'
miRNA:   3'- cgaUGC-GUGAGUGAu--GCU-------------UCUAUGCG- -5'
24680 3' -47.7 NC_005264.1 + 47502 0.66 0.999894
Target:  5'- uGCUGCGC-CUCGCcuguuugcccgacGCGGAGAguaucgAgGCa -3'
miRNA:   3'- -CGAUGCGuGAGUGa------------UGCUUCUa-----UgCG- -5'
24680 3' -47.7 NC_005264.1 + 33690 0.66 0.999876
Target:  5'- gGCUaACGCGCaUCGCUcCGAGccgcgucUGCGCg -3'
miRNA:   3'- -CGA-UGCGUG-AGUGAuGCUUcu-----AUGCG- -5'
24680 3' -47.7 NC_005264.1 + 79321 0.66 0.999876
Target:  5'- cGCUcgcCGCAUUUGCgUGCGuAGcGUGCGCg -3'
miRNA:   3'- -CGAu--GCGUGAGUG-AUGCuUC-UAUGCG- -5'
24680 3' -47.7 NC_005264.1 + 103952 0.66 0.999876
Target:  5'- cGCUAUGCGCgaaCGCgugGCGc---UGCGCa -3'
miRNA:   3'- -CGAUGCGUGa--GUGa--UGCuucuAUGCG- -5'
24680 3' -47.7 NC_005264.1 + 83493 0.66 0.999876
Target:  5'- --gGCGCACaUCACg--GGAGA-GCGCa -3'
miRNA:   3'- cgaUGCGUG-AGUGaugCUUCUaUGCG- -5'
24680 3' -47.7 NC_005264.1 + 162426 0.66 0.999876
Target:  5'- gGCaACGCACagACUACGcgaacAGGUACa- -3'
miRNA:   3'- -CGaUGCGUGagUGAUGCu----UCUAUGcg -5'
24680 3' -47.7 NC_005264.1 + 136088 0.66 0.999876
Target:  5'- cGCcGCGUugUCGCUaACGAuGAgcgACGa -3'
miRNA:   3'- -CGaUGCGugAGUGA-UGCUuCUa--UGCg -5'
24680 3' -47.7 NC_005264.1 + 136455 0.66 0.999876
Target:  5'- cGCUGaggcCGCGCUCAgagACGgcGccGCGCa -3'
miRNA:   3'- -CGAU----GCGUGAGUga-UGCuuCuaUGCG- -5'
24680 3' -47.7 NC_005264.1 + 6304 0.66 0.999876
Target:  5'- aGCU--GCACUUGCgcgGCGAGGcuuCGCg -3'
miRNA:   3'- -CGAugCGUGAGUGa--UGCUUCuauGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.