miRNA display CGI


Results 1 - 20 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24680 3' -47.7 NC_005264.1 + 92100 0.66 0.999905
Target:  5'- --gGCGCAUuucgUCGCUGCGgcGGcacacaGCGCa -3'
miRNA:   3'- cgaUGCGUG----AGUGAUGCuuCUa-----UGCG- -5'
24680 3' -47.7 NC_005264.1 + 4460 0.66 0.999814
Target:  5'- gGCUGCGCgauucugggcgggaaACagUCGC-GCGAGGGU-CGCg -3'
miRNA:   3'- -CGAUGCG---------------UG--AGUGaUGCUUCUAuGCG- -5'
24680 3' -47.7 NC_005264.1 + 33508 0.66 0.999794
Target:  5'- -gUGCGCG-UCGCUGCGcccGGUAgGCg -3'
miRNA:   3'- cgAUGCGUgAGUGAUGCuu-CUAUgCG- -5'
24680 3' -47.7 NC_005264.1 + 75098 0.66 0.999794
Target:  5'- cGCUacuugACGCAgUCgcGCUGCGgcGAUGaaaGCc -3'
miRNA:   3'- -CGA-----UGCGUgAG--UGAUGCuuCUAUg--CG- -5'
24680 3' -47.7 NC_005264.1 + 43225 0.66 0.999794
Target:  5'- gGCUACgGCgggGCUgGCggGCGGacuaaguaaGGAUGCGCu -3'
miRNA:   3'- -CGAUG-CG---UGAgUGa-UGCU---------UCUAUGCG- -5'
24680 3' -47.7 NC_005264.1 + 127195 0.66 0.999789
Target:  5'- cGCgaaGCGCAgguacaacgugccCUCGCaGCGGuuGGAUAUGCc -3'
miRNA:   3'- -CGa--UGCGU-------------GAGUGaUGCU--UCUAUGCG- -5'
24680 3' -47.7 NC_005264.1 + 142884 0.66 0.999737
Target:  5'- cGCgcCGCGCcuuucuccagUCACgGCGAcGAUGCGUc -3'
miRNA:   3'- -CGauGCGUG----------AGUGaUGCUuCUAUGCG- -5'
24680 3' -47.7 NC_005264.1 + 104328 0.66 0.999737
Target:  5'- gGCgcgACGcCGCUUACga-GGAGGUGcCGCu -3'
miRNA:   3'- -CGa--UGC-GUGAGUGaugCUUCUAU-GCG- -5'
24680 3' -47.7 NC_005264.1 + 119414 0.66 0.999737
Target:  5'- uGCUGuacuUGCACUCGCggcugGCGGGcGAUcuCGCu -3'
miRNA:   3'- -CGAU----GCGUGAGUGa----UGCUU-CUAu-GCG- -5'
24680 3' -47.7 NC_005264.1 + 51662 0.66 0.99984
Target:  5'- cGCUGC-CACUCGCguagaccCGguGGUaACGCa -3'
miRNA:   3'- -CGAUGcGUGAGUGau-----GCuuCUA-UGCG- -5'
24680 3' -47.7 NC_005264.1 + 106437 0.66 0.99984
Target:  5'- gGCgcCGCGCUCGauaUGCGAucgucgcgccucAGGgcagACGCa -3'
miRNA:   3'- -CGauGCGUGAGUg--AUGCU------------UCUa---UGCG- -5'
24680 3' -47.7 NC_005264.1 + 29262 0.66 0.99984
Target:  5'- uGCgGCGCGCagaUugUugGAcuGUGCGCg -3'
miRNA:   3'- -CGaUGCGUGa--GugAugCUucUAUGCG- -5'
24680 3' -47.7 NC_005264.1 + 80183 0.66 0.999905
Target:  5'- cCUGCGCGCgguCUugaaaGGAGAgGCGCg -3'
miRNA:   3'- cGAUGCGUGaguGAug---CUUCUaUGCG- -5'
24680 3' -47.7 NC_005264.1 + 11983 0.66 0.999905
Target:  5'- uGCcGCGCGCggCACgGCaGAG-UACGCg -3'
miRNA:   3'- -CGaUGCGUGa-GUGaUGcUUCuAUGCG- -5'
24680 3' -47.7 NC_005264.1 + 145173 0.66 0.999905
Target:  5'- gGCUGCGC-CUgagGCUACGAuauacaAUugGCg -3'
miRNA:   3'- -CGAUGCGuGAg--UGAUGCUuc----UAugCG- -5'
24680 3' -47.7 NC_005264.1 + 96951 0.66 0.999903
Target:  5'- --aGCGaCGCUCGCUcuuUGAuguucucguuuauAGGUGCGCg -3'
miRNA:   3'- cgaUGC-GUGAGUGAu--GCU-------------UCUAUGCG- -5'
24680 3' -47.7 NC_005264.1 + 47502 0.66 0.999894
Target:  5'- uGCUGCGC-CUCGCcuguuugcccgacGCGGAGAguaucgAgGCa -3'
miRNA:   3'- -CGAUGCGuGAGUGa------------UGCUUCUa-----UgCG- -5'
24680 3' -47.7 NC_005264.1 + 162426 0.66 0.999876
Target:  5'- gGCaACGCACagACUACGcgaacAGGUACa- -3'
miRNA:   3'- -CGaUGCGUGagUGAUGCu----UCUAUGcg -5'
24680 3' -47.7 NC_005264.1 + 25904 0.66 0.999873
Target:  5'- cGCUGCGC-CUucuugucCGCcACGAAGcgGCuGCa -3'
miRNA:   3'- -CGAUGCGuGA-------GUGaUGCUUCuaUG-CG- -5'
24680 3' -47.7 NC_005264.1 + 101604 0.66 0.99984
Target:  5'- aGCUggaGCGCGCcaUCGCcaACGuGGAUGCGg -3'
miRNA:   3'- -CGA---UGCGUG--AGUGa-UGCuUCUAUGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.