Results 21 - 40 of 148 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
24680 | 3' | -47.7 | NC_005264.1 | + | 27652 | 0.66 | 0.999737 |
Target: 5'- cGUUugGcCACgcggCGCUcggACcGAGGUACGCg -3' miRNA: 3'- -CGAugC-GUGa---GUGA---UGcUUCUAUGCG- -5' |
|||||||
24680 | 3' | -47.7 | NC_005264.1 | + | 119414 | 0.66 | 0.999737 |
Target: 5'- uGCUGuacuUGCACUCGCggcugGCGGGcGAUcuCGCu -3' miRNA: 3'- -CGAU----GCGUGAGUGa----UGCUU-CUAu-GCG- -5' |
|||||||
24680 | 3' | -47.7 | NC_005264.1 | + | 101604 | 0.66 | 0.99984 |
Target: 5'- aGCUggaGCGCGCcaUCGCcaACGuGGAUGCGg -3' miRNA: 3'- -CGA---UGCGUG--AGUGa-UGCuUCUAUGCg -5' |
|||||||
24680 | 3' | -47.7 | NC_005264.1 | + | 25904 | 0.66 | 0.999873 |
Target: 5'- cGCUGCGC-CUucuugucCGCcACGAAGcgGCuGCa -3' miRNA: 3'- -CGAUGCGuGA-------GUGaUGCUUCuaUG-CG- -5' |
|||||||
24680 | 3' | -47.7 | NC_005264.1 | + | 162426 | 0.66 | 0.999876 |
Target: 5'- gGCaACGCACagACUACGcgaacAGGUACa- -3' miRNA: 3'- -CGaUGCGUGagUGAUGCu----UCUAUGcg -5' |
|||||||
24680 | 3' | -47.7 | NC_005264.1 | + | 47502 | 0.66 | 0.999894 |
Target: 5'- uGCUGCGC-CUCGCcuguuugcccgacGCGGAGAguaucgAgGCa -3' miRNA: 3'- -CGAUGCGuGAGUGa------------UGCUUCUa-----UgCG- -5' |
|||||||
24680 | 3' | -47.7 | NC_005264.1 | + | 96951 | 0.66 | 0.999903 |
Target: 5'- --aGCGaCGCUCGCUcuuUGAuguucucguuuauAGGUGCGCg -3' miRNA: 3'- cgaUGC-GUGAGUGAu--GCU-------------UCUAUGCG- -5' |
|||||||
24680 | 3' | -47.7 | NC_005264.1 | + | 145173 | 0.66 | 0.999905 |
Target: 5'- gGCUGCGC-CUgagGCUACGAuauacaAUugGCg -3' miRNA: 3'- -CGAUGCGuGAg--UGAUGCUuc----UAugCG- -5' |
|||||||
24680 | 3' | -47.7 | NC_005264.1 | + | 11983 | 0.66 | 0.999905 |
Target: 5'- uGCcGCGCGCggCACgGCaGAG-UACGCg -3' miRNA: 3'- -CGaUGCGUGa-GUGaUGcUUCuAUGCG- -5' |
|||||||
24680 | 3' | -47.7 | NC_005264.1 | + | 80183 | 0.66 | 0.999905 |
Target: 5'- cCUGCGCGCgguCUugaaaGGAGAgGCGCg -3' miRNA: 3'- cGAUGCGUGaguGAug---CUUCUaUGCG- -5' |
|||||||
24680 | 3' | -47.7 | NC_005264.1 | + | 29262 | 0.66 | 0.99984 |
Target: 5'- uGCgGCGCGCagaUugUugGAcuGUGCGCg -3' miRNA: 3'- -CGaUGCGUGa--GugAugCUucUAUGCG- -5' |
|||||||
24680 | 3' | -47.7 | NC_005264.1 | + | 106437 | 0.66 | 0.99984 |
Target: 5'- gGCgcCGCGCUCGauaUGCGAucgucgcgccucAGGgcagACGCa -3' miRNA: 3'- -CGauGCGUGAGUg--AUGCU------------UCUa---UGCG- -5' |
|||||||
24680 | 3' | -47.7 | NC_005264.1 | + | 104328 | 0.66 | 0.999737 |
Target: 5'- gGCgcgACGcCGCUUACga-GGAGGUGcCGCu -3' miRNA: 3'- -CGa--UGC-GUGAGUGaugCUUCUAU-GCG- -5' |
|||||||
24680 | 3' | -47.7 | NC_005264.1 | + | 142884 | 0.66 | 0.999737 |
Target: 5'- cGCgcCGCGCcuuucuccagUCACgGCGAcGAUGCGUc -3' miRNA: 3'- -CGauGCGUG----------AGUGaUGCUuCUAUGCG- -5' |
|||||||
24680 | 3' | -47.7 | NC_005264.1 | + | 127195 | 0.66 | 0.999789 |
Target: 5'- cGCgaaGCGCAgguacaacgugccCUCGCaGCGGuuGGAUAUGCc -3' miRNA: 3'- -CGa--UGCGU-------------GAGUGaUGCU--UCUAUGCG- -5' |
|||||||
24680 | 3' | -47.7 | NC_005264.1 | + | 43225 | 0.66 | 0.999794 |
Target: 5'- gGCUACgGCgggGCUgGCggGCGGacuaaguaaGGAUGCGCu -3' miRNA: 3'- -CGAUG-CG---UGAgUGa-UGCU---------UCUAUGCG- -5' |
|||||||
24680 | 3' | -47.7 | NC_005264.1 | + | 75098 | 0.66 | 0.999794 |
Target: 5'- cGCUacuugACGCAgUCgcGCUGCGgcGAUGaaaGCc -3' miRNA: 3'- -CGA-----UGCGUgAG--UGAUGCuuCUAUg--CG- -5' |
|||||||
24680 | 3' | -47.7 | NC_005264.1 | + | 33508 | 0.66 | 0.999794 |
Target: 5'- -gUGCGCG-UCGCUGCGcccGGUAgGCg -3' miRNA: 3'- cgAUGCGUgAGUGAUGCuu-CUAUgCG- -5' |
|||||||
24680 | 3' | -47.7 | NC_005264.1 | + | 4460 | 0.66 | 0.999814 |
Target: 5'- gGCUGCGCgauucugggcgggaaACagUCGC-GCGAGGGU-CGCg -3' miRNA: 3'- -CGAUGCG---------------UG--AGUGaUGCUUCUAuGCG- -5' |
|||||||
24680 | 3' | -47.7 | NC_005264.1 | + | 51662 | 0.66 | 0.99984 |
Target: 5'- cGCUGC-CACUCGCguagaccCGguGGUaACGCa -3' miRNA: 3'- -CGAUGcGUGAGUGau-----GCuuCUA-UGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home