miRNA display CGI


Results 1 - 20 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24680 3' -47.7 NC_005264.1 + 113359 1.17 0.007136
Target:  5'- cGCUACGCACUCACUACGAAGAUACGCg -3'
miRNA:   3'- -CGAUGCGUGAGUGAUGCUUCUAUGCG- -5'
24680 3' -47.7 NC_005264.1 + 94422 0.78 0.81921
Target:  5'- aCUGCGCGaUCGCUgACGuGGGAUGCGCg -3'
miRNA:   3'- cGAUGCGUgAGUGA-UGC-UUCUAUGCG- -5'
24680 3' -47.7 NC_005264.1 + 157330 0.77 0.836838
Target:  5'- cGUUACGCcUUCGCggaggccgACGAGGGUugGCg -3'
miRNA:   3'- -CGAUGCGuGAGUGa-------UGCUUCUAugCG- -5'
24680 3' -47.7 NC_005264.1 + 38303 0.77 0.836838
Target:  5'- cGUUACGCcUUCGCggaggccgACGAGGGUugGCg -3'
miRNA:   3'- -CGAUGCGuGAGUGa-------UGCUUCUAugCG- -5'
24680 3' -47.7 NC_005264.1 + 52588 0.76 0.869585
Target:  5'- cCUACGCGC--GCUACGuGGAUugGCu -3'
miRNA:   3'- cGAUGCGUGagUGAUGCuUCUAugCG- -5'
24680 3' -47.7 NC_005264.1 + 157393 0.75 0.911612
Target:  5'- uGCUGCGCAUgCugUACGgcGcgGCGUu -3'
miRNA:   3'- -CGAUGCGUGaGugAUGCuuCuaUGCG- -5'
24680 3' -47.7 NC_005264.1 + 138504 0.75 0.917727
Target:  5'- uGCcGCGCGauUUCACUcGCGAAGAaACGCu -3'
miRNA:   3'- -CGaUGCGU--GAGUGA-UGCUUCUaUGCG- -5'
24680 3' -47.7 NC_005264.1 + 86572 0.75 0.923582
Target:  5'- gGgUGCGCACUCuggcgauCUGCGuGAGAcACGCg -3'
miRNA:   3'- -CgAUGCGUGAGu------GAUGC-UUCUaUGCG- -5'
24680 3' -47.7 NC_005264.1 + 67372 0.75 0.929174
Target:  5'- aGCgccCGCGCUCGCUGCGcccgccgGCGCg -3'
miRNA:   3'- -CGau-GCGUGAGUGAUGCuucua--UGCG- -5'
24680 3' -47.7 NC_005264.1 + 102643 0.74 0.934505
Target:  5'- aCUACGCACUCGCUugGuauuguGGGgcgaGCg -3'
miRNA:   3'- cGAUGCGUGAGUGAugCu-----UCUaug-CG- -5'
24680 3' -47.7 NC_005264.1 + 29903 0.74 0.948936
Target:  5'- gGCgUGCgGCGCUaccccgucggCGCUAgGGAGGUACGCg -3'
miRNA:   3'- -CG-AUG-CGUGA----------GUGAUgCUUCUAUGCG- -5'
24680 3' -47.7 NC_005264.1 + 7582 0.74 0.948936
Target:  5'- cCUAcccCGCGC-CGCUGCGGAGAUGCu- -3'
miRNA:   3'- cGAU---GCGUGaGUGAUGCUUCUAUGcg -5'
24680 3' -47.7 NC_005264.1 + 59009 0.74 0.953233
Target:  5'- aGCUugGCGCUCA--GCGAAucGA-GCGCa -3'
miRNA:   3'- -CGAugCGUGAGUgaUGCUU--CUaUGCG- -5'
24680 3' -47.7 NC_005264.1 + 145707 0.73 0.961082
Target:  5'- cCUGCGCGCcCAagcCUACaGAGAUAUGCg -3'
miRNA:   3'- cGAUGCGUGaGU---GAUGcUUCUAUGCG- -5'
24680 3' -47.7 NC_005264.1 + 85831 0.72 0.971065
Target:  5'- aGC-GCGCGCUCAgUACcGGGucuUGCGCg -3'
miRNA:   3'- -CGaUGCGUGAGUgAUGcUUCu--AUGCG- -5'
24680 3' -47.7 NC_005264.1 + 108515 0.72 0.973941
Target:  5'- cGCcGCGCGCUUACUGCu-GGAU-CGUg -3'
miRNA:   3'- -CGaUGCGUGAGUGAUGcuUCUAuGCG- -5'
24680 3' -47.7 NC_005264.1 + 68116 0.72 0.976604
Target:  5'- aGCgacaagGCGCGCUCAUacucgGCGggGAUGuCGg -3'
miRNA:   3'- -CGa-----UGCGUGAGUGa----UGCuuCUAU-GCg -5'
24680 3' -47.7 NC_005264.1 + 145742 0.72 0.979062
Target:  5'- uGCUGCGgGgUUugUuuGCGgcGGUGCGCa -3'
miRNA:   3'- -CGAUGCgUgAGugA--UGCuuCUAUGCG- -5'
24680 3' -47.7 NC_005264.1 + 39610 0.72 0.981323
Target:  5'- aGCUGCGCGCUUGCUcCu-AGAcacgGCGCu -3'
miRNA:   3'- -CGAUGCGUGAGUGAuGcuUCUa---UGCG- -5'
24680 3' -47.7 NC_005264.1 + 84928 0.71 0.983396
Target:  5'- gGCUGCGCGCUCugU-UGuAGugugGCGCc -3'
miRNA:   3'- -CGAUGCGUGAGugAuGCuUCua--UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.