miRNA display CGI


Results 21 - 40 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24680 3' -47.7 NC_005264.1 + 16865 0.71 0.983396
Target:  5'- cGCgcaguuCGUAUUCGCgccgGCGAAGGU-CGCa -3'
miRNA:   3'- -CGau----GCGUGAGUGa---UGCUUCUAuGCG- -5'
24680 3' -47.7 NC_005264.1 + 6501 0.71 0.983396
Target:  5'- uGCUGcCGCACUUGgUaGCGAAGcaGCGCg -3'
miRNA:   3'- -CGAU-GCGUGAGUgA-UGCUUCuaUGCG- -5'
24680 3' -47.7 NC_005264.1 + 40657 0.71 0.98529
Target:  5'- gGCUGCGCGagcCUUACUACGcug--GCGCc -3'
miRNA:   3'- -CGAUGCGU---GAGUGAUGCuucuaUGCG- -5'
24680 3' -47.7 NC_005264.1 + 84485 0.71 0.98529
Target:  5'- uGCUACGCucugggcCUUACUAUGGAGAa--GCu -3'
miRNA:   3'- -CGAUGCGu------GAGUGAUGCUUCUaugCG- -5'
24680 3' -47.7 NC_005264.1 + 792 0.71 0.98529
Target:  5'- uGCgguaGCGCUcCAgUACGGcuGGGUGCGCg -3'
miRNA:   3'- -CGaug-CGUGA-GUgAUGCU--UCUAUGCG- -5'
24680 3' -47.7 NC_005264.1 + 148348 0.71 0.987014
Target:  5'- cGCgguCGCcCUCuCUGCGAGGAUuuucuucgaagcACGCg -3'
miRNA:   3'- -CGau-GCGuGAGuGAUGCUUCUA------------UGCG- -5'
24680 3' -47.7 NC_005264.1 + 74192 0.71 0.987014
Target:  5'- gGCUcucGCGCAUUCAgaACGAGGGggACGa -3'
miRNA:   3'- -CGA---UGCGUGAGUgaUGCUUCUa-UGCg -5'
24680 3' -47.7 NC_005264.1 + 34762 0.71 0.987014
Target:  5'- cGC--CGCugUCGCUacACGAAGAUGagcCGCu -3'
miRNA:   3'- -CGauGCGugAGUGA--UGCUUCUAU---GCG- -5'
24680 3' -47.7 NC_005264.1 + 87166 0.71 0.988579
Target:  5'- cGCUGCGCGCgacuccgCACUAU-AAGuUAUGCu -3'
miRNA:   3'- -CGAUGCGUGa------GUGAUGcUUCuAUGCG- -5'
24680 3' -47.7 NC_005264.1 + 70156 0.71 0.989993
Target:  5'- cGCggcgGCGC-CUCACUaccgcaauaccuGCGAGGuggACGCc -3'
miRNA:   3'- -CGa---UGCGuGAGUGA------------UGCUUCua-UGCG- -5'
24680 3' -47.7 NC_005264.1 + 95083 0.7 0.991266
Target:  5'- aGCcACGCA---ACUGCGAccugcgccgAGAUACGCg -3'
miRNA:   3'- -CGaUGCGUgagUGAUGCU---------UCUAUGCG- -5'
24680 3' -47.7 NC_005264.1 + 90726 0.7 0.991266
Target:  5'- gGCgGCGCuccCUCAa-ACGAgAGAUACGCg -3'
miRNA:   3'- -CGaUGCGu--GAGUgaUGCU-UCUAUGCG- -5'
24680 3' -47.7 NC_005264.1 + 119013 0.7 0.991266
Target:  5'- --aACGUacGCUgGCUACGGAGAUucuguucugcugACGCg -3'
miRNA:   3'- cgaUGCG--UGAgUGAUGCUUCUA------------UGCG- -5'
24680 3' -47.7 NC_005264.1 + 120199 0.7 0.992408
Target:  5'- uGCcgGCGCGCg----AUGggGGUACGCa -3'
miRNA:   3'- -CGa-UGCGUGagugaUGCuuCUAUGCG- -5'
24680 3' -47.7 NC_005264.1 + 38133 0.7 0.992408
Target:  5'- --cGCGCGCUCugUACucguGGGaACGCa -3'
miRNA:   3'- cgaUGCGUGAGugAUGcu--UCUaUGCG- -5'
24680 3' -47.7 NC_005264.1 + 1172 0.7 0.992408
Target:  5'- uGCcgGCGCGCg----AUGggGGUACGCa -3'
miRNA:   3'- -CGa-UGCGUGagugaUGCuuCUAUGCG- -5'
24680 3' -47.7 NC_005264.1 + 157160 0.7 0.992408
Target:  5'- --cGCGCGCUCugUACucguGGGaACGCa -3'
miRNA:   3'- cgaUGCGUGAGugAUGcu--UCUaUGCG- -5'
24680 3' -47.7 NC_005264.1 + 52965 0.7 0.993331
Target:  5'- uCUACGCgGCggUGCUGCGAAcucaggcGGUGCGCg -3'
miRNA:   3'- cGAUGCG-UGa-GUGAUGCUU-------CUAUGCG- -5'
24680 3' -47.7 NC_005264.1 + 12547 0.7 0.993428
Target:  5'- aGCgggGgGCGUUCGCcGCGAAGAUACcGCu -3'
miRNA:   3'- -CGa--UgCGUGAGUGaUGCUUCUAUG-CG- -5'
24680 3' -47.7 NC_005264.1 + 85477 0.7 0.993428
Target:  5'- gGCgACGCGCUagACgggACGGAGAU-CGCc -3'
miRNA:   3'- -CGaUGCGUGAg-UGa--UGCUUCUAuGCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.