Results 21 - 40 of 148 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24680 | 3' | -47.7 | NC_005264.1 | + | 16865 | 0.71 | 0.983396 |
Target: 5'- cGCgcaguuCGUAUUCGCgccgGCGAAGGU-CGCa -3' miRNA: 3'- -CGau----GCGUGAGUGa---UGCUUCUAuGCG- -5' |
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24680 | 3' | -47.7 | NC_005264.1 | + | 6501 | 0.71 | 0.983396 |
Target: 5'- uGCUGcCGCACUUGgUaGCGAAGcaGCGCg -3' miRNA: 3'- -CGAU-GCGUGAGUgA-UGCUUCuaUGCG- -5' |
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24680 | 3' | -47.7 | NC_005264.1 | + | 40657 | 0.71 | 0.98529 |
Target: 5'- gGCUGCGCGagcCUUACUACGcug--GCGCc -3' miRNA: 3'- -CGAUGCGU---GAGUGAUGCuucuaUGCG- -5' |
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24680 | 3' | -47.7 | NC_005264.1 | + | 84485 | 0.71 | 0.98529 |
Target: 5'- uGCUACGCucugggcCUUACUAUGGAGAa--GCu -3' miRNA: 3'- -CGAUGCGu------GAGUGAUGCUUCUaugCG- -5' |
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24680 | 3' | -47.7 | NC_005264.1 | + | 792 | 0.71 | 0.98529 |
Target: 5'- uGCgguaGCGCUcCAgUACGGcuGGGUGCGCg -3' miRNA: 3'- -CGaug-CGUGA-GUgAUGCU--UCUAUGCG- -5' |
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24680 | 3' | -47.7 | NC_005264.1 | + | 148348 | 0.71 | 0.987014 |
Target: 5'- cGCgguCGCcCUCuCUGCGAGGAUuuucuucgaagcACGCg -3' miRNA: 3'- -CGau-GCGuGAGuGAUGCUUCUA------------UGCG- -5' |
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24680 | 3' | -47.7 | NC_005264.1 | + | 74192 | 0.71 | 0.987014 |
Target: 5'- gGCUcucGCGCAUUCAgaACGAGGGggACGa -3' miRNA: 3'- -CGA---UGCGUGAGUgaUGCUUCUa-UGCg -5' |
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24680 | 3' | -47.7 | NC_005264.1 | + | 34762 | 0.71 | 0.987014 |
Target: 5'- cGC--CGCugUCGCUacACGAAGAUGagcCGCu -3' miRNA: 3'- -CGauGCGugAGUGA--UGCUUCUAU---GCG- -5' |
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24680 | 3' | -47.7 | NC_005264.1 | + | 87166 | 0.71 | 0.988579 |
Target: 5'- cGCUGCGCGCgacuccgCACUAU-AAGuUAUGCu -3' miRNA: 3'- -CGAUGCGUGa------GUGAUGcUUCuAUGCG- -5' |
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24680 | 3' | -47.7 | NC_005264.1 | + | 70156 | 0.71 | 0.989993 |
Target: 5'- cGCggcgGCGC-CUCACUaccgcaauaccuGCGAGGuggACGCc -3' miRNA: 3'- -CGa---UGCGuGAGUGA------------UGCUUCua-UGCG- -5' |
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24680 | 3' | -47.7 | NC_005264.1 | + | 95083 | 0.7 | 0.991266 |
Target: 5'- aGCcACGCA---ACUGCGAccugcgccgAGAUACGCg -3' miRNA: 3'- -CGaUGCGUgagUGAUGCU---------UCUAUGCG- -5' |
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24680 | 3' | -47.7 | NC_005264.1 | + | 90726 | 0.7 | 0.991266 |
Target: 5'- gGCgGCGCuccCUCAa-ACGAgAGAUACGCg -3' miRNA: 3'- -CGaUGCGu--GAGUgaUGCU-UCUAUGCG- -5' |
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24680 | 3' | -47.7 | NC_005264.1 | + | 119013 | 0.7 | 0.991266 |
Target: 5'- --aACGUacGCUgGCUACGGAGAUucuguucugcugACGCg -3' miRNA: 3'- cgaUGCG--UGAgUGAUGCUUCUA------------UGCG- -5' |
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24680 | 3' | -47.7 | NC_005264.1 | + | 120199 | 0.7 | 0.992408 |
Target: 5'- uGCcgGCGCGCg----AUGggGGUACGCa -3' miRNA: 3'- -CGa-UGCGUGagugaUGCuuCUAUGCG- -5' |
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24680 | 3' | -47.7 | NC_005264.1 | + | 38133 | 0.7 | 0.992408 |
Target: 5'- --cGCGCGCUCugUACucguGGGaACGCa -3' miRNA: 3'- cgaUGCGUGAGugAUGcu--UCUaUGCG- -5' |
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24680 | 3' | -47.7 | NC_005264.1 | + | 1172 | 0.7 | 0.992408 |
Target: 5'- uGCcgGCGCGCg----AUGggGGUACGCa -3' miRNA: 3'- -CGa-UGCGUGagugaUGCuuCUAUGCG- -5' |
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24680 | 3' | -47.7 | NC_005264.1 | + | 157160 | 0.7 | 0.992408 |
Target: 5'- --cGCGCGCUCugUACucguGGGaACGCa -3' miRNA: 3'- cgaUGCGUGAGugAUGcu--UCUaUGCG- -5' |
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24680 | 3' | -47.7 | NC_005264.1 | + | 52965 | 0.7 | 0.993331 |
Target: 5'- uCUACGCgGCggUGCUGCGAAcucaggcGGUGCGCg -3' miRNA: 3'- cGAUGCG-UGa-GUGAUGCUU-------CUAUGCG- -5' |
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24680 | 3' | -47.7 | NC_005264.1 | + | 12547 | 0.7 | 0.993428 |
Target: 5'- aGCgggGgGCGUUCGCcGCGAAGAUACcGCu -3' miRNA: 3'- -CGa--UgCGUGAGUGaUGCUUCUAUG-CG- -5' |
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24680 | 3' | -47.7 | NC_005264.1 | + | 85477 | 0.7 | 0.993428 |
Target: 5'- gGCgACGCGCUagACgggACGGAGAU-CGCc -3' miRNA: 3'- -CGaUGCGUGAg-UGa--UGCUUCUAuGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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