miRNA display CGI


Results 41 - 60 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24680 3' -47.7 NC_005264.1 + 131574 0.7 0.993428
Target:  5'- aGCgggGgGCGUUCGCcGCGAAGAUACcGCu -3'
miRNA:   3'- -CGa--UgCGUGAGUGaUGCUUCUAUG-CG- -5'
24680 3' -47.7 NC_005264.1 + 96643 0.7 0.994249
Target:  5'- cGCggagGCGCAC-CGCccgccgaUGCGGGcGGUGCGCu -3'
miRNA:   3'- -CGa---UGCGUGaGUG-------AUGCUU-CUAUGCG- -5'
24680 3' -47.7 NC_005264.1 + 129136 0.7 0.994335
Target:  5'- uCUACGCGCagaCGCggcuCGGAgcGAUGCGCg -3'
miRNA:   3'- cGAUGCGUGa--GUGau--GCUU--CUAUGCG- -5'
24680 3' -47.7 NC_005264.1 + 156134 0.7 0.994335
Target:  5'- cGCUAggacugauUGCAUUCGaguCUACGAAGG-GCGCa -3'
miRNA:   3'- -CGAU--------GCGUGAGU---GAUGCUUCUaUGCG- -5'
24680 3' -47.7 NC_005264.1 + 117280 0.7 0.994335
Target:  5'- -gUGCGCGCcgaCACggGCGAAGAUGC-Ca -3'
miRNA:   3'- cgAUGCGUGa--GUGa-UGCUUCUAUGcG- -5'
24680 3' -47.7 NC_005264.1 + 55001 0.7 0.994335
Target:  5'- aGCUcauuuUGC-CUCACUACGGAGu--CGCc -3'
miRNA:   3'- -CGAu----GCGuGAGUGAUGCUUCuauGCG- -5'
24680 3' -47.7 NC_005264.1 + 50560 0.7 0.994335
Target:  5'- aGCUAgGCGCgCGCgUGCG-GGAaGCGCa -3'
miRNA:   3'- -CGAUgCGUGaGUG-AUGCuUCUaUGCG- -5'
24680 3' -47.7 NC_005264.1 + 71614 0.7 0.995138
Target:  5'- aGCUACGCGggcuaUCGC-GCGA--AUGCGCg -3'
miRNA:   3'- -CGAUGCGUg----AGUGaUGCUucUAUGCG- -5'
24680 3' -47.7 NC_005264.1 + 49334 0.7 0.995138
Target:  5'- gGCUGuuCGCGCUCGgccCGGAGGaACGCg -3'
miRNA:   3'- -CGAU--GCGUGAGUgauGCUUCUaUGCG- -5'
24680 3' -47.7 NC_005264.1 + 61149 0.69 0.995846
Target:  5'- aGCUGa-CGCUCGCUGCGGu--UGCGUu -3'
miRNA:   3'- -CGAUgcGUGAGUGAUGCUucuAUGCG- -5'
24680 3' -47.7 NC_005264.1 + 29784 0.69 0.995846
Target:  5'- gGCU-CGCACgcCACguagGCGuuGAUAUGCu -3'
miRNA:   3'- -CGAuGCGUGa-GUGa---UGCuuCUAUGCG- -5'
24680 3' -47.7 NC_005264.1 + 138441 0.69 0.995846
Target:  5'- cGCcGCGCGCUUACUugGAcGAccUACu- -3'
miRNA:   3'- -CGaUGCGUGAGUGAugCUuCU--AUGcg -5'
24680 3' -47.7 NC_005264.1 + 114479 0.69 0.995846
Target:  5'- gGCUGCGCcccaaaauaaACUUGCuUACGAAuGAcacaUGCGCg -3'
miRNA:   3'- -CGAUGCG----------UGAGUG-AUGCUU-CU----AUGCG- -5'
24680 3' -47.7 NC_005264.1 + 58626 0.69 0.995846
Target:  5'- gGCUGCGCGuaggauaacggUUUACUGUGAAGGgcggACGCc -3'
miRNA:   3'- -CGAUGCGU-----------GAGUGAUGCUUCUa---UGCG- -5'
24680 3' -47.7 NC_005264.1 + 130407 0.69 0.99629
Target:  5'- cGCcGCGUACcgguuccguagaauUUACUugGAAGAgccgaUGCGCg -3'
miRNA:   3'- -CGaUGCGUG--------------AGUGAugCUUCU-----AUGCG- -5'
24680 3' -47.7 NC_005264.1 + 129584 0.69 0.996409
Target:  5'- cUUGCGCGCUCugcaggcGCUGCGgcGcgGCGg -3'
miRNA:   3'- cGAUGCGUGAG-------UGAUGCuuCuaUGCg -5'
24680 3' -47.7 NC_005264.1 + 52732 0.69 0.996468
Target:  5'- uGCgacuCGCACcggccaUCACacgGCGAGGGUACGa -3'
miRNA:   3'- -CGau--GCGUG------AGUGa--UGCUUCUAUGCg -5'
24680 3' -47.7 NC_005264.1 + 21387 0.69 0.996468
Target:  5'- aCUAUGCGCUCAg-ACGAGGuagcCGCc -3'
miRNA:   3'- cGAUGCGUGAGUgaUGCUUCuau-GCG- -5'
24680 3' -47.7 NC_005264.1 + 135883 0.69 0.996468
Target:  5'- uCUACGCcaaGC-CACUGCGA---UGCGCa -3'
miRNA:   3'- cGAUGCG---UGaGUGAUGCUucuAUGCG- -5'
24680 3' -47.7 NC_005264.1 + 32954 0.69 0.996468
Target:  5'- cGCaGCaGCAUaaaaACUGCGGAGAcACGCg -3'
miRNA:   3'- -CGaUG-CGUGag--UGAUGCUUCUaUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.