miRNA display CGI


Results 21 - 40 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24680 3' -47.7 NC_005264.1 + 25904 0.66 0.999873
Target:  5'- cGCUGCGC-CUucuugucCGCcACGAAGcgGCuGCa -3'
miRNA:   3'- -CGAUGCGuGA-------GUGaUGCUUCuaUG-CG- -5'
24680 3' -47.7 NC_005264.1 + 51662 0.66 0.99984
Target:  5'- cGCUGC-CACUCGCguagaccCGguGGUaACGCa -3'
miRNA:   3'- -CGAUGcGUGAGUGau-----GCuuCUA-UGCG- -5'
24680 3' -47.7 NC_005264.1 + 106437 0.66 0.99984
Target:  5'- gGCgcCGCGCUCGauaUGCGAucgucgcgccucAGGgcagACGCa -3'
miRNA:   3'- -CGauGCGUGAGUg--AUGCU------------UCUa---UGCG- -5'
24680 3' -47.7 NC_005264.1 + 101604 0.66 0.99984
Target:  5'- aGCUggaGCGCGCcaUCGCcaACGuGGAUGCGg -3'
miRNA:   3'- -CGA---UGCGUG--AGUGa-UGCuUCUAUGCg -5'
24680 3' -47.7 NC_005264.1 + 117172 0.66 0.99984
Target:  5'- cGCcACGUGCuUCACUGCGcuug-GCGCc -3'
miRNA:   3'- -CGaUGCGUG-AGUGAUGCuucuaUGCG- -5'
24680 3' -47.7 NC_005264.1 + 76710 0.66 0.99984
Target:  5'- aGCgcgGCGCaACUCGCUuCGAcaucguauuggGGAaGCGUg -3'
miRNA:   3'- -CGa--UGCG-UGAGUGAuGCU-----------UCUaUGCG- -5'
24680 3' -47.7 NC_005264.1 + 62631 0.66 0.99984
Target:  5'- aCUGCGCcccgcggaGCUCA--GCGAAGucGCGCu -3'
miRNA:   3'- cGAUGCG--------UGAGUgaUGCUUCuaUGCG- -5'
24680 3' -47.7 NC_005264.1 + 29262 0.66 0.99984
Target:  5'- uGCgGCGCGCagaUugUugGAcuGUGCGCg -3'
miRNA:   3'- -CGaUGCGUGa--GugAugCUucUAUGCG- -5'
24680 3' -47.7 NC_005264.1 + 4460 0.66 0.999814
Target:  5'- gGCUGCGCgauucugggcgggaaACagUCGC-GCGAGGGU-CGCg -3'
miRNA:   3'- -CGAUGCG---------------UG--AGUGaUGCUUCUAuGCG- -5'
24680 3' -47.7 NC_005264.1 + 123487 0.66 0.999814
Target:  5'- gGCUGCGCgauucugggcgggaaACagUCGC-GCGAGGGU-CGCg -3'
miRNA:   3'- -CGAUGCG---------------UG--AGUGaUGCUUCUAuGCG- -5'
24680 3' -47.7 NC_005264.1 + 58355 0.66 0.999794
Target:  5'- cCUGuCGUACUCug-GCGggGccgGCGCg -3'
miRNA:   3'- cGAU-GCGUGAGugaUGCuuCua-UGCG- -5'
24680 3' -47.7 NC_005264.1 + 162252 0.66 0.999794
Target:  5'- gGCUACgGCgggGCUgGCggGCGGacuaaguaaGGAUGCGCu -3'
miRNA:   3'- -CGAUG-CG---UGAgUGa-UGCU---------UCUAUGCG- -5'
24680 3' -47.7 NC_005264.1 + 152535 0.66 0.999794
Target:  5'- -gUGCGCG-UCGCUGCGcccGGUAgGCg -3'
miRNA:   3'- cgAUGCGUgAGUGAUGCuu-CUAUgCG- -5'
24680 3' -47.7 NC_005264.1 + 56160 0.66 0.999794
Target:  5'- uGCUGCGCGuCUCcggguCUAgGggGGcUAgGCu -3'
miRNA:   3'- -CGAUGCGU-GAGu----GAUgCuuCU-AUgCG- -5'
24680 3' -47.7 NC_005264.1 + 68196 0.66 0.999794
Target:  5'- gGCUACGUGCUC-C-AUGggGAcggaaaacaGCGCg -3'
miRNA:   3'- -CGAUGCGUGAGuGaUGCuuCUa--------UGCG- -5'
24680 3' -47.7 NC_005264.1 + 43225 0.66 0.999794
Target:  5'- gGCUACgGCgggGCUgGCggGCGGacuaaguaaGGAUGCGCu -3'
miRNA:   3'- -CGAUG-CG---UGAgUGa-UGCU---------UCUAUGCG- -5'
24680 3' -47.7 NC_005264.1 + 33508 0.66 0.999794
Target:  5'- -gUGCGCG-UCGCUGCGcccGGUAgGCg -3'
miRNA:   3'- cgAUGCGUgAGUGAUGCuu-CUAUgCG- -5'
24680 3' -47.7 NC_005264.1 + 75098 0.66 0.999794
Target:  5'- cGCUacuugACGCAgUCgcGCUGCGgcGAUGaaaGCc -3'
miRNA:   3'- -CGA-----UGCGUgAG--UGAUGCuuCUAUg--CG- -5'
24680 3' -47.7 NC_005264.1 + 127195 0.66 0.999789
Target:  5'- cGCgaaGCGCAgguacaacgugccCUCGCaGCGGuuGGAUAUGCc -3'
miRNA:   3'- -CGa--UGCGU-------------GAGUGaUGCU--UCUAUGCG- -5'
24680 3' -47.7 NC_005264.1 + 104328 0.66 0.999737
Target:  5'- gGCgcgACGcCGCUUACga-GGAGGUGcCGCu -3'
miRNA:   3'- -CGa--UGC-GUGAGUGaugCUUCUAU-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.