miRNA display CGI


Results 41 - 60 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24680 3' -47.7 NC_005264.1 + 13324 0.66 0.999737
Target:  5'- gGCgACGC-CUgGCUAagcCGAAGGgaacgGCGCg -3'
miRNA:   3'- -CGaUGCGuGAgUGAU---GCUUCUa----UGCG- -5'
24680 3' -47.7 NC_005264.1 + 119414 0.66 0.999737
Target:  5'- uGCUGuacuUGCACUCGCggcugGCGGGcGAUcuCGCu -3'
miRNA:   3'- -CGAU----GCGUGAGUGa----UGCUU-CUAu-GCG- -5'
24680 3' -47.7 NC_005264.1 + 104328 0.66 0.999737
Target:  5'- gGCgcgACGcCGCUUACga-GGAGGUGcCGCu -3'
miRNA:   3'- -CGa--UGC-GUGAGUGaugCUUCUAU-GCG- -5'
24680 3' -47.7 NC_005264.1 + 142884 0.66 0.999737
Target:  5'- cGCgcCGCGCcuuucuccagUCACgGCGAcGAUGCGUc -3'
miRNA:   3'- -CGauGCGUG----------AGUGaUGCUuCUAUGCG- -5'
24680 3' -47.7 NC_005264.1 + 27652 0.66 0.999737
Target:  5'- cGUUugGcCACgcggCGCUcggACcGAGGUACGCg -3'
miRNA:   3'- -CGAugC-GUGa---GUGA---UGcUUCUAUGCG- -5'
24680 3' -47.7 NC_005264.1 + 79221 0.66 0.999731
Target:  5'- gGCUGCGUGCagGCggcgGCGggGGUgucuuugggguuuACGUu -3'
miRNA:   3'- -CGAUGCGUGagUGa---UGCuuCUA-------------UGCG- -5'
24680 3' -47.7 NC_005264.1 + 83985 0.67 0.999667
Target:  5'- --gACGCGCUaCACUugGAacaauGGccgACGCu -3'
miRNA:   3'- cgaUGCGUGA-GUGAugCU-----UCua-UGCG- -5'
24680 3' -47.7 NC_005264.1 + 131783 0.67 0.999667
Target:  5'- uGCUACGCggaAUUCGCUAauacccaAAGAcACGCu -3'
miRNA:   3'- -CGAUGCG---UGAGUGAUgc-----UUCUaUGCG- -5'
24680 3' -47.7 NC_005264.1 + 120997 0.67 0.999581
Target:  5'- aCUGCGCG-UCAacguaUACGGAGccGCGCu -3'
miRNA:   3'- cGAUGCGUgAGUg----AUGCUUCuaUGCG- -5'
24680 3' -47.7 NC_005264.1 + 34075 0.67 0.999476
Target:  5'- aGCcGCGCACUgGC-GCGAAGGacuuccACGUg -3'
miRNA:   3'- -CGaUGCGUGAgUGaUGCUUCUa-----UGCG- -5'
24680 3' -47.7 NC_005264.1 + 49462 0.67 0.999476
Target:  5'- -gUGCGCGCUCACUcgccGCGuaucuucguaguGAG-UGCGUa -3'
miRNA:   3'- cgAUGCGUGAGUGA----UGC------------UUCuAUGCG- -5'
24680 3' -47.7 NC_005264.1 + 20288 0.67 0.999476
Target:  5'- uCUGCGCGCUUGCggcccCGAGGGgcugagguCGCu -3'
miRNA:   3'- cGAUGCGUGAGUGau---GCUUCUau------GCG- -5'
24680 3' -47.7 NC_005264.1 + 25729 0.67 0.99935
Target:  5'- cGgUGCGUACUCGgUcGCGGAGAggccagugAUGCu -3'
miRNA:   3'- -CgAUGCGUGAGUgA-UGCUUCUa-------UGCG- -5'
24680 3' -47.7 NC_005264.1 + 160525 0.67 0.99935
Target:  5'- cUUACGCGC-CGCUGgGggGGgaauaguuUACGUa -3'
miRNA:   3'- cGAUGCGUGaGUGAUgCuuCU--------AUGCG- -5'
24680 3' -47.7 NC_005264.1 + 153550 0.67 0.99935
Target:  5'- aCUACGuCGcCUCcacccugccuggACUACGAAGA-ACGCu -3'
miRNA:   3'- cGAUGC-GU-GAG------------UGAUGCUUCUaUGCG- -5'
24680 3' -47.7 NC_005264.1 + 54844 0.67 0.99935
Target:  5'- cGUcACGCuguCUCACUGCGu-GAUGCu- -3'
miRNA:   3'- -CGaUGCGu--GAGUGAUGCuuCUAUGcg -5'
24680 3' -47.7 NC_005264.1 + 84979 0.67 0.99935
Target:  5'- uGCUGCGUuaGCgUCGugGCGGAGAUAaGCa -3'
miRNA:   3'- -CGAUGCG--UG-AGUgaUGCUUCUAUgCG- -5'
24680 3' -47.7 NC_005264.1 + 52858 0.67 0.999261
Target:  5'- aGCUGCGCGCauacgacgugcacaCGCgcgaGCGAGGGgcUGCGUg -3'
miRNA:   3'- -CGAUGCGUGa-------------GUGa---UGCUUCU--AUGCG- -5'
24680 3' -47.7 NC_005264.1 + 19241 0.67 0.999197
Target:  5'- uGCUACGUGC-CACgugaAAGGUACGUc -3'
miRNA:   3'- -CGAUGCGUGaGUGaugcUUCUAUGCG- -5'
24680 3' -47.7 NC_005264.1 + 112105 0.67 0.999146
Target:  5'- --aACGUACUCGauccuauccuuuacCUGCGggGGUuccucguuccGCGCg -3'
miRNA:   3'- cgaUGCGUGAGU--------------GAUGCuuCUA----------UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.