miRNA display CGI


Results 61 - 80 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24680 3' -47.7 NC_005264.1 + 42444 0.68 0.999092
Target:  5'- cGCUGCgGCACUCGCgcuCGAAuguuucugcucuagcGAacaugGCGCu -3'
miRNA:   3'- -CGAUG-CGUGAGUGau-GCUU---------------CUa----UGCG- -5'
24680 3' -47.7 NC_005264.1 + 5242 0.68 0.999015
Target:  5'- aGCaggACGCccuGCUgGgCUACGggGAaGCGCc -3'
miRNA:   3'- -CGa--UGCG---UGAgU-GAUGCuuCUaUGCG- -5'
24680 3' -47.7 NC_005264.1 + 159811 0.68 0.999015
Target:  5'- cGCaGCgGCGCUgcaaACUGCGggGG-GCGCu -3'
miRNA:   3'- -CGaUG-CGUGAg---UGAUGCuuCUaUGCG- -5'
24680 3' -47.7 NC_005264.1 + 40785 0.68 0.999015
Target:  5'- cGCaGCgGCGCUgcaaACUGCGggGG-GCGCu -3'
miRNA:   3'- -CGaUG-CGUGAg---UGAUGCuuCUaUGCG- -5'
24680 3' -47.7 NC_005264.1 + 78687 0.68 0.999015
Target:  5'- --gGCGCGCgCGCUGCGAccacuucccGGGgcuCGCg -3'
miRNA:   3'- cgaUGCGUGaGUGAUGCU---------UCUau-GCG- -5'
24680 3' -47.7 NC_005264.1 + 156509 0.68 0.998798
Target:  5'- cGCguauCGCACa-GCUACGggGGcuCGCg -3'
miRNA:   3'- -CGau--GCGUGagUGAUGCuuCUauGCG- -5'
24680 3' -47.7 NC_005264.1 + 37482 0.68 0.998798
Target:  5'- cGCguauCGCACa-GCUACGggGGcuCGCg -3'
miRNA:   3'- -CGau--GCGUGagUGAUGCuuCUauGCG- -5'
24680 3' -47.7 NC_005264.1 + 29333 0.68 0.998798
Target:  5'- --aGCGC-CUCcugcgGCUACGAcgucugccGGGUACGCc -3'
miRNA:   3'- cgaUGCGuGAG-----UGAUGCU--------UCUAUGCG- -5'
24680 3' -47.7 NC_005264.1 + 109602 0.68 0.998774
Target:  5'- uCUAUGgccggucCGC-CGCUuucGCGGAGAUACGCg -3'
miRNA:   3'- cGAUGC-------GUGaGUGA---UGCUUCUAUGCG- -5'
24680 3' -47.7 NC_005264.1 + 81379 0.68 0.998542
Target:  5'- --aGCGCACaguUUACUGcCGAgaugcaugcGGGUGCGCg -3'
miRNA:   3'- cgaUGCGUG---AGUGAU-GCU---------UCUAUGCG- -5'
24680 3' -47.7 NC_005264.1 + 87507 0.68 0.998542
Target:  5'- aCUACGCGCUguuaccggCACUggcgcGCGGcAGAUGCuGCa -3'
miRNA:   3'- cGAUGCGUGA--------GUGA-----UGCU-UCUAUG-CG- -5'
24680 3' -47.7 NC_005264.1 + 98217 0.68 0.998542
Target:  5'- uGCaacgGCGUcggGCcgCGCUGCGGAGAgguuauggGCGCa -3'
miRNA:   3'- -CGa---UGCG---UGa-GUGAUGCUUCUa-------UGCG- -5'
24680 3' -47.7 NC_005264.1 + 70568 0.68 0.998542
Target:  5'- aGCUACGagaUCuACgugGCGAAGA-GCGCg -3'
miRNA:   3'- -CGAUGCgugAG-UGa--UGCUUCUaUGCG- -5'
24680 3' -47.7 NC_005264.1 + 70728 0.68 0.998514
Target:  5'- cGCUGCGCugUgugccgcCGCaGCGAcGAaaUGCGCc -3'
miRNA:   3'- -CGAUGCGugA-------GUGaUGCUuCU--AUGCG- -5'
24680 3' -47.7 NC_005264.1 + 119213 0.68 0.998242
Target:  5'- aGCguaACGCGCgacCAC-GCGAGGuuugGCGCg -3'
miRNA:   3'- -CGa--UGCGUGa--GUGaUGCUUCua--UGCG- -5'
24680 3' -47.7 NC_005264.1 + 103019 0.68 0.99789
Target:  5'- cGCUugGUGCggCGCUAcCGGcaagcauGGUGCGCu -3'
miRNA:   3'- -CGAugCGUGa-GUGAU-GCUu------CUAUGCG- -5'
24680 3' -47.7 NC_005264.1 + 77489 0.69 0.997482
Target:  5'- cCU-CGCAgUCGCUGCGAgcgaucaugGGGUuCGCg -3'
miRNA:   3'- cGAuGCGUgAGUGAUGCU---------UCUAuGCG- -5'
24680 3' -47.7 NC_005264.1 + 33044 0.69 0.997482
Target:  5'- aGCUACGCgACUCAgcuaagauaauCUGCGAcGu--CGCg -3'
miRNA:   3'- -CGAUGCG-UGAGU-----------GAUGCUuCuauGCG- -5'
24680 3' -47.7 NC_005264.1 + 111046 0.69 0.997482
Target:  5'- gGCUcgcGCGgACUCGCcggACGAAGugccgccGCGCg -3'
miRNA:   3'- -CGA---UGCgUGAGUGa--UGCUUCua-----UGCG- -5'
24680 3' -47.7 NC_005264.1 + 149429 0.69 0.997482
Target:  5'- gGCggucGCGCGC-CGgUGCGGAGAgcUGCg -3'
miRNA:   3'- -CGa---UGCGUGaGUgAUGCUUCUauGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.