miRNA display CGI


Results 1 - 20 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24680 3' -47.7 NC_005264.1 + 792 0.71 0.98529
Target:  5'- uGCgguaGCGCUcCAgUACGGcuGGGUGCGCg -3'
miRNA:   3'- -CGaug-CGUGA-GUgAUGCU--UCUAUGCG- -5'
24680 3' -47.7 NC_005264.1 + 1172 0.7 0.992408
Target:  5'- uGCcgGCGCGCg----AUGggGGUACGCa -3'
miRNA:   3'- -CGa-UGCGUGagugaUGCuuCUAUGCG- -5'
24680 3' -47.7 NC_005264.1 + 4460 0.66 0.999814
Target:  5'- gGCUGCGCgauucugggcgggaaACagUCGC-GCGAGGGU-CGCg -3'
miRNA:   3'- -CGAUGCG---------------UG--AGUGaUGCUUCUAuGCG- -5'
24680 3' -47.7 NC_005264.1 + 5242 0.68 0.999015
Target:  5'- aGCaggACGCccuGCUgGgCUACGggGAaGCGCc -3'
miRNA:   3'- -CGa--UGCG---UGAgU-GAUGCuuCUaUGCG- -5'
24680 3' -47.7 NC_005264.1 + 6304 0.66 0.999876
Target:  5'- aGCU--GCACUUGCgcgGCGAGGcuuCGCg -3'
miRNA:   3'- -CGAugCGUGAGUGa--UGCUUCuauGCG- -5'
24680 3' -47.7 NC_005264.1 + 6501 0.71 0.983396
Target:  5'- uGCUGcCGCACUUGgUaGCGAAGcaGCGCg -3'
miRNA:   3'- -CGAU-GCGUGAGUgA-UGCUUCuaUGCG- -5'
24680 3' -47.7 NC_005264.1 + 7123 0.69 0.997207
Target:  5'- --cGCGCGUUCACUuucGCGAAGAagggcagccugaggcUACGCc -3'
miRNA:   3'- cgaUGCGUGAGUGA---UGCUUCU---------------AUGCG- -5'
24680 3' -47.7 NC_005264.1 + 7582 0.74 0.948936
Target:  5'- cCUAcccCGCGC-CGCUGCGGAGAUGCu- -3'
miRNA:   3'- cGAU---GCGUGaGUGAUGCUUCUAUGcg -5'
24680 3' -47.7 NC_005264.1 + 11983 0.66 0.999905
Target:  5'- uGCcGCGCGCggCACgGCaGAG-UACGCg -3'
miRNA:   3'- -CGaUGCGUGa-GUGaUGcUUCuAUGCG- -5'
24680 3' -47.7 NC_005264.1 + 12547 0.7 0.993428
Target:  5'- aGCgggGgGCGUUCGCcGCGAAGAUACcGCu -3'
miRNA:   3'- -CGa--UgCGUGAGUGaUGCUUCUAUG-CG- -5'
24680 3' -47.7 NC_005264.1 + 13324 0.66 0.999737
Target:  5'- gGCgACGC-CUgGCUAagcCGAAGGgaacgGCGCg -3'
miRNA:   3'- -CGaUGCGuGAgUGAU---GCUUCUa----UGCG- -5'
24680 3' -47.7 NC_005264.1 + 16865 0.71 0.983396
Target:  5'- cGCgcaguuCGUAUUCGCgccgGCGAAGGU-CGCa -3'
miRNA:   3'- -CGau----GCGUGAGUGa---UGCUUCUAuGCG- -5'
24680 3' -47.7 NC_005264.1 + 19108 0.66 0.999905
Target:  5'- cGCggcgGCGCggagACgagCACUACGAugGGGcUACGUg -3'
miRNA:   3'- -CGa---UGCG----UGa--GUGAUGCU--UCU-AUGCG- -5'
24680 3' -47.7 NC_005264.1 + 19241 0.67 0.999197
Target:  5'- uGCUACGUGC-CACgugaAAGGUACGUc -3'
miRNA:   3'- -CGAUGCGUGaGUGaugcUUCUAUGCG- -5'
24680 3' -47.7 NC_005264.1 + 20288 0.67 0.999476
Target:  5'- uCUGCGCGCUUGCggcccCGAGGGgcugagguCGCu -3'
miRNA:   3'- cGAUGCGUGAGUGau---GCUUCUau------GCG- -5'
24680 3' -47.7 NC_005264.1 + 21387 0.69 0.996468
Target:  5'- aCUAUGCGCUCAg-ACGAGGuagcCGCc -3'
miRNA:   3'- cGAUGCGUGAGUgaUGCUUCuau-GCG- -5'
24680 3' -47.7 NC_005264.1 + 25729 0.67 0.99935
Target:  5'- cGgUGCGUACUCGgUcGCGGAGAggccagugAUGCu -3'
miRNA:   3'- -CgAUGCGUGAGUgA-UGCUUCUa-------UGCG- -5'
24680 3' -47.7 NC_005264.1 + 25904 0.66 0.999873
Target:  5'- cGCUGCGC-CUucuugucCGCcACGAAGcgGCuGCa -3'
miRNA:   3'- -CGAUGCGuGA-------GUGaUGCUUCuaUG-CG- -5'
24680 3' -47.7 NC_005264.1 + 27652 0.66 0.999737
Target:  5'- cGUUugGcCACgcggCGCUcggACcGAGGUACGCg -3'
miRNA:   3'- -CGAugC-GUGa---GUGA---UGcUUCUAUGCG- -5'
24680 3' -47.7 NC_005264.1 + 29262 0.66 0.99984
Target:  5'- uGCgGCGCGCagaUugUugGAcuGUGCGCg -3'
miRNA:   3'- -CGaUGCGUGa--GugAugCUucUAUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.