miRNA display CGI


Results 21 - 40 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24680 3' -47.7 NC_005264.1 + 29333 0.68 0.998798
Target:  5'- --aGCGC-CUCcugcgGCUACGAcgucugccGGGUACGCc -3'
miRNA:   3'- cgaUGCGuGAG-----UGAUGCU--------UCUAUGCG- -5'
24680 3' -47.7 NC_005264.1 + 29784 0.69 0.995846
Target:  5'- gGCU-CGCACgcCACguagGCGuuGAUAUGCu -3'
miRNA:   3'- -CGAuGCGUGa-GUGa---UGCuuCUAUGCG- -5'
24680 3' -47.7 NC_005264.1 + 29903 0.74 0.948936
Target:  5'- gGCgUGCgGCGCUaccccgucggCGCUAgGGAGGUACGCg -3'
miRNA:   3'- -CG-AUG-CGUGA----------GUGAUgCUUCUAUGCG- -5'
24680 3' -47.7 NC_005264.1 + 30402 0.69 0.997482
Target:  5'- gGCggucGCGCGC-CGgUGCGGAGAgcUGCg -3'
miRNA:   3'- -CGa---UGCGUGaGUgAUGCUUCUauGCG- -5'
24680 3' -47.7 NC_005264.1 + 32954 0.69 0.996468
Target:  5'- cGCaGCaGCAUaaaaACUGCGGAGAcACGCg -3'
miRNA:   3'- -CGaUG-CGUGag--UGAUGCUUCUaUGCG- -5'
24680 3' -47.7 NC_005264.1 + 33044 0.69 0.997482
Target:  5'- aGCUACGCgACUCAgcuaagauaauCUGCGAcGu--CGCg -3'
miRNA:   3'- -CGAUGCG-UGAGU-----------GAUGCUuCuauGCG- -5'
24680 3' -47.7 NC_005264.1 + 33508 0.66 0.999794
Target:  5'- -gUGCGCG-UCGCUGCGcccGGUAgGCg -3'
miRNA:   3'- cgAUGCGUgAGUGAUGCuu-CUAUgCG- -5'
24680 3' -47.7 NC_005264.1 + 33690 0.66 0.999876
Target:  5'- gGCUaACGCGCaUCGCUcCGAGccgcgucUGCGCg -3'
miRNA:   3'- -CGA-UGCGUG-AGUGAuGCUUcu-----AUGCG- -5'
24680 3' -47.7 NC_005264.1 + 34075 0.67 0.999476
Target:  5'- aGCcGCGCACUgGC-GCGAAGGacuuccACGUg -3'
miRNA:   3'- -CGaUGCGUGAgUGaUGCUUCUa-----UGCG- -5'
24680 3' -47.7 NC_005264.1 + 34762 0.71 0.987014
Target:  5'- cGC--CGCugUCGCUacACGAAGAUGagcCGCu -3'
miRNA:   3'- -CGauGCGugAGUGA--UGCUUCUAU---GCG- -5'
24680 3' -47.7 NC_005264.1 + 37482 0.68 0.998798
Target:  5'- cGCguauCGCACa-GCUACGggGGcuCGCg -3'
miRNA:   3'- -CGau--GCGUGagUGAUGCuuCUauGCG- -5'
24680 3' -47.7 NC_005264.1 + 38133 0.7 0.992408
Target:  5'- --cGCGCGCUCugUACucguGGGaACGCa -3'
miRNA:   3'- cgaUGCGUGAGugAUGcu--UCUaUGCG- -5'
24680 3' -47.7 NC_005264.1 + 38303 0.77 0.836838
Target:  5'- cGUUACGCcUUCGCggaggccgACGAGGGUugGCg -3'
miRNA:   3'- -CGAUGCGuGAGUGa-------UGCUUCUAugCG- -5'
24680 3' -47.7 NC_005264.1 + 39610 0.72 0.981323
Target:  5'- aGCUGCGCGCUUGCUcCu-AGAcacgGCGCu -3'
miRNA:   3'- -CGAUGCGUGAGUGAuGcuUCUa---UGCG- -5'
24680 3' -47.7 NC_005264.1 + 40657 0.71 0.98529
Target:  5'- gGCUGCGCGagcCUUACUACGcug--GCGCc -3'
miRNA:   3'- -CGAUGCGU---GAGUGAUGCuucuaUGCG- -5'
24680 3' -47.7 NC_005264.1 + 40785 0.68 0.999015
Target:  5'- cGCaGCgGCGCUgcaaACUGCGggGG-GCGCu -3'
miRNA:   3'- -CGaUG-CGUGAg---UGAUGCuuCUaUGCG- -5'
24680 3' -47.7 NC_005264.1 + 42444 0.68 0.999092
Target:  5'- cGCUGCgGCACUCGCgcuCGAAuguuucugcucuagcGAacaugGCGCu -3'
miRNA:   3'- -CGAUG-CGUGAGUGau-GCUU---------------CUa----UGCG- -5'
24680 3' -47.7 NC_005264.1 + 43225 0.66 0.999794
Target:  5'- gGCUACgGCgggGCUgGCggGCGGacuaaguaaGGAUGCGCu -3'
miRNA:   3'- -CGAUG-CG---UGAgUGa-UGCU---------UCUAUGCG- -5'
24680 3' -47.7 NC_005264.1 + 47502 0.66 0.999894
Target:  5'- uGCUGCGC-CUCGCcuguuugcccgacGCGGAGAguaucgAgGCa -3'
miRNA:   3'- -CGAUGCGuGAGUGa------------UGCUUCUa-----UgCG- -5'
24680 3' -47.7 NC_005264.1 + 49334 0.7 0.995138
Target:  5'- gGCUGuuCGCGCUCGgccCGGAGGaACGCg -3'
miRNA:   3'- -CGAU--GCGUGAGUgauGCUUCUaUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.