miRNA display CGI


Results 41 - 60 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24680 3' -47.7 NC_005264.1 + 49462 0.67 0.999476
Target:  5'- -gUGCGCGCUCACUcgccGCGuaucuucguaguGAG-UGCGUa -3'
miRNA:   3'- cgAUGCGUGAGUGA----UGC------------UUCuAUGCG- -5'
24680 3' -47.7 NC_005264.1 + 50560 0.7 0.994335
Target:  5'- aGCUAgGCGCgCGCgUGCG-GGAaGCGCa -3'
miRNA:   3'- -CGAUgCGUGaGUG-AUGCuUCUaUGCG- -5'
24680 3' -47.7 NC_005264.1 + 51662 0.66 0.99984
Target:  5'- cGCUGC-CACUCGCguagaccCGguGGUaACGCa -3'
miRNA:   3'- -CGAUGcGUGAGUGau-----GCuuCUA-UGCG- -5'
24680 3' -47.7 NC_005264.1 + 52588 0.76 0.869585
Target:  5'- cCUACGCGC--GCUACGuGGAUugGCu -3'
miRNA:   3'- cGAUGCGUGagUGAUGCuUCUAugCG- -5'
24680 3' -47.7 NC_005264.1 + 52732 0.69 0.996468
Target:  5'- uGCgacuCGCACcggccaUCACacgGCGAGGGUACGa -3'
miRNA:   3'- -CGau--GCGUG------AGUGa--UGCUUCUAUGCg -5'
24680 3' -47.7 NC_005264.1 + 52858 0.67 0.999261
Target:  5'- aGCUGCGCGCauacgacgugcacaCGCgcgaGCGAGGGgcUGCGUg -3'
miRNA:   3'- -CGAUGCGUGa-------------GUGa---UGCUUCU--AUGCG- -5'
24680 3' -47.7 NC_005264.1 + 52965 0.7 0.993331
Target:  5'- uCUACGCgGCggUGCUGCGAAcucaggcGGUGCGCg -3'
miRNA:   3'- cGAUGCG-UGa-GUGAUGCUU-------CUAUGCG- -5'
24680 3' -47.7 NC_005264.1 + 54844 0.67 0.99935
Target:  5'- cGUcACGCuguCUCACUGCGu-GAUGCu- -3'
miRNA:   3'- -CGaUGCGu--GAGUGAUGCuuCUAUGcg -5'
24680 3' -47.7 NC_005264.1 + 55001 0.7 0.994335
Target:  5'- aGCUcauuuUGC-CUCACUACGGAGu--CGCc -3'
miRNA:   3'- -CGAu----GCGuGAGUGAUGCUUCuauGCG- -5'
24680 3' -47.7 NC_005264.1 + 56160 0.66 0.999794
Target:  5'- uGCUGCGCGuCUCcggguCUAgGggGGcUAgGCu -3'
miRNA:   3'- -CGAUGCGU-GAGu----GAUgCuuCU-AUgCG- -5'
24680 3' -47.7 NC_005264.1 + 58355 0.66 0.999794
Target:  5'- cCUGuCGUACUCug-GCGggGccgGCGCg -3'
miRNA:   3'- cGAU-GCGUGAGugaUGCuuCua-UGCG- -5'
24680 3' -47.7 NC_005264.1 + 58626 0.69 0.995846
Target:  5'- gGCUGCGCGuaggauaacggUUUACUGUGAAGGgcggACGCc -3'
miRNA:   3'- -CGAUGCGU-----------GAGUGAUGCUUCUa---UGCG- -5'
24680 3' -47.7 NC_005264.1 + 59009 0.74 0.953233
Target:  5'- aGCUugGCGCUCA--GCGAAucGA-GCGCa -3'
miRNA:   3'- -CGAugCGUGAGUgaUGCUU--CUaUGCG- -5'
24680 3' -47.7 NC_005264.1 + 61149 0.69 0.995846
Target:  5'- aGCUGa-CGCUCGCUGCGGu--UGCGUu -3'
miRNA:   3'- -CGAUgcGUGAGUGAUGCUucuAUGCG- -5'
24680 3' -47.7 NC_005264.1 + 62631 0.66 0.99984
Target:  5'- aCUGCGCcccgcggaGCUCA--GCGAAGucGCGCu -3'
miRNA:   3'- cGAUGCG--------UGAGUgaUGCUUCuaUGCG- -5'
24680 3' -47.7 NC_005264.1 + 67372 0.75 0.929174
Target:  5'- aGCgccCGCGCUCGCUGCGcccgccgGCGCg -3'
miRNA:   3'- -CGau-GCGUGAGUGAUGCuucua--UGCG- -5'
24680 3' -47.7 NC_005264.1 + 68116 0.72 0.976604
Target:  5'- aGCgacaagGCGCGCUCAUacucgGCGggGAUGuCGg -3'
miRNA:   3'- -CGa-----UGCGUGAGUGa----UGCuuCUAU-GCg -5'
24680 3' -47.7 NC_005264.1 + 68196 0.66 0.999794
Target:  5'- gGCUACGUGCUC-C-AUGggGAcggaaaacaGCGCg -3'
miRNA:   3'- -CGAUGCGUGAGuGaUGCuuCUa--------UGCG- -5'
24680 3' -47.7 NC_005264.1 + 69586 0.66 0.999905
Target:  5'- gGUUGCGCGaaCGCgccgACGAGG--GCGCc -3'
miRNA:   3'- -CGAUGCGUgaGUGa---UGCUUCuaUGCG- -5'
24680 3' -47.7 NC_005264.1 + 70156 0.71 0.989993
Target:  5'- cGCggcgGCGC-CUCACUaccgcaauaccuGCGAGGuggACGCc -3'
miRNA:   3'- -CGa---UGCGuGAGUGA------------UGCUUCua-UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.