miRNA display CGI


Results 1 - 20 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24680 3' -47.7 NC_005264.1 + 162426 0.66 0.999876
Target:  5'- gGCaACGCACagACUACGcgaacAGGUACa- -3'
miRNA:   3'- -CGaUGCGUGagUGAUGCu----UCUAUGcg -5'
24680 3' -47.7 NC_005264.1 + 162252 0.66 0.999794
Target:  5'- gGCUACgGCgggGCUgGCggGCGGacuaaguaaGGAUGCGCu -3'
miRNA:   3'- -CGAUG-CG---UGAgUGa-UGCU---------UCUAUGCG- -5'
24680 3' -47.7 NC_005264.1 + 160525 0.67 0.99935
Target:  5'- cUUACGCGC-CGCUGgGggGGgaauaguuUACGUa -3'
miRNA:   3'- cGAUGCGUGaGUGAUgCuuCU--------AUGCG- -5'
24680 3' -47.7 NC_005264.1 + 159811 0.68 0.999015
Target:  5'- cGCaGCgGCGCUgcaaACUGCGggGG-GCGCu -3'
miRNA:   3'- -CGaUG-CGUGAg---UGAUGCuuCUaUGCG- -5'
24680 3' -47.7 NC_005264.1 + 157393 0.75 0.911612
Target:  5'- uGCUGCGCAUgCugUACGgcGcgGCGUu -3'
miRNA:   3'- -CGAUGCGUGaGugAUGCuuCuaUGCG- -5'
24680 3' -47.7 NC_005264.1 + 157330 0.77 0.836838
Target:  5'- cGUUACGCcUUCGCggaggccgACGAGGGUugGCg -3'
miRNA:   3'- -CGAUGCGuGAGUGa-------UGCUUCUAugCG- -5'
24680 3' -47.7 NC_005264.1 + 157160 0.7 0.992408
Target:  5'- --cGCGCGCUCugUACucguGGGaACGCa -3'
miRNA:   3'- cgaUGCGUGAGugAUGcu--UCUaUGCG- -5'
24680 3' -47.7 NC_005264.1 + 156509 0.68 0.998798
Target:  5'- cGCguauCGCACa-GCUACGggGGcuCGCg -3'
miRNA:   3'- -CGau--GCGUGagUGAUGCuuCUauGCG- -5'
24680 3' -47.7 NC_005264.1 + 156134 0.7 0.994335
Target:  5'- cGCUAggacugauUGCAUUCGaguCUACGAAGG-GCGCa -3'
miRNA:   3'- -CGAU--------GCGUGAGU---GAUGCUUCUaUGCG- -5'
24680 3' -47.7 NC_005264.1 + 153550 0.67 0.99935
Target:  5'- aCUACGuCGcCUCcacccugccuggACUACGAAGA-ACGCu -3'
miRNA:   3'- cGAUGC-GU-GAG------------UGAUGCUUCUaUGCG- -5'
24680 3' -47.7 NC_005264.1 + 152535 0.66 0.999794
Target:  5'- -gUGCGCG-UCGCUGCGcccGGUAgGCg -3'
miRNA:   3'- cgAUGCGUgAGUGAUGCuu-CUAUgCG- -5'
24680 3' -47.7 NC_005264.1 + 151981 0.69 0.996468
Target:  5'- cGCaGCaGCAUaaaaACUGCGGAGAcACGCg -3'
miRNA:   3'- -CGaUG-CGUGag--UGAUGCUUCUaUGCG- -5'
24680 3' -47.7 NC_005264.1 + 149429 0.69 0.997482
Target:  5'- gGCggucGCGCGC-CGgUGCGGAGAgcUGCg -3'
miRNA:   3'- -CGa---UGCGUGaGUgAUGCUUCUauGCG- -5'
24680 3' -47.7 NC_005264.1 + 148348 0.71 0.987014
Target:  5'- cGCgguCGCcCUCuCUGCGAGGAUuuucuucgaagcACGCg -3'
miRNA:   3'- -CGau-GCGuGAGuGAUGCUUCUA------------UGCG- -5'
24680 3' -47.7 NC_005264.1 + 145742 0.72 0.979062
Target:  5'- uGCUGCGgGgUUugUuuGCGgcGGUGCGCa -3'
miRNA:   3'- -CGAUGCgUgAGugA--UGCuuCUAUGCG- -5'
24680 3' -47.7 NC_005264.1 + 145707 0.73 0.961082
Target:  5'- cCUGCGCGCcCAagcCUACaGAGAUAUGCg -3'
miRNA:   3'- cGAUGCGUGaGU---GAUGcUUCUAUGCG- -5'
24680 3' -47.7 NC_005264.1 + 145173 0.66 0.999905
Target:  5'- gGCUGCGC-CUgagGCUACGAuauacaAUugGCg -3'
miRNA:   3'- -CGAUGCGuGAg--UGAUGCUuc----UAugCG- -5'
24680 3' -47.7 NC_005264.1 + 142884 0.66 0.999737
Target:  5'- cGCgcCGCGCcuuucuccagUCACgGCGAcGAUGCGUc -3'
miRNA:   3'- -CGauGCGUG----------AGUGaUGCUuCUAUGCG- -5'
24680 3' -47.7 NC_005264.1 + 142768 0.69 0.99701
Target:  5'- aGCUGacggUGCuuGCUCGCUACGcGGGgcCGCg -3'
miRNA:   3'- -CGAU----GCG--UGAGUGAUGCuUCUauGCG- -5'
24680 3' -47.7 NC_005264.1 + 138504 0.75 0.917727
Target:  5'- uGCcGCGCGauUUCACUcGCGAAGAaACGCu -3'
miRNA:   3'- -CGaUGCGU--GAGUGA-UGCUUCUaUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.