miRNA display CGI


Results 21 - 40 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24680 3' -47.7 NC_005264.1 + 138441 0.69 0.995846
Target:  5'- cGCcGCGCGCUUACUugGAcGAccUACu- -3'
miRNA:   3'- -CGaUGCGUGAGUGAugCUuCU--AUGcg -5'
24680 3' -47.7 NC_005264.1 + 136455 0.66 0.999876
Target:  5'- cGCUGaggcCGCGCUCAgagACGgcGccGCGCa -3'
miRNA:   3'- -CGAU----GCGUGAGUga-UGCuuCuaUGCG- -5'
24680 3' -47.7 NC_005264.1 + 136088 0.66 0.999876
Target:  5'- cGCcGCGUugUCGCUaACGAuGAgcgACGa -3'
miRNA:   3'- -CGaUGCGugAGUGA-UGCUuCUa--UGCg -5'
24680 3' -47.7 NC_005264.1 + 135883 0.69 0.996468
Target:  5'- uCUACGCcaaGC-CACUGCGA---UGCGCa -3'
miRNA:   3'- cGAUGCG---UGaGUGAUGCUucuAUGCG- -5'
24680 3' -47.7 NC_005264.1 + 131783 0.67 0.999667
Target:  5'- uGCUACGCggaAUUCGCUAauacccaAAGAcACGCu -3'
miRNA:   3'- -CGAUGCG---UGAGUGAUgc-----UUCUaUGCG- -5'
24680 3' -47.7 NC_005264.1 + 131574 0.7 0.993428
Target:  5'- aGCgggGgGCGUUCGCcGCGAAGAUACcGCu -3'
miRNA:   3'- -CGa--UgCGUGAGUGaUGCUUCUAUG-CG- -5'
24680 3' -47.7 NC_005264.1 + 131010 0.66 0.999905
Target:  5'- uGCcGCGCGCggCACgGCaGAG-UACGCg -3'
miRNA:   3'- -CGaUGCGUGa-GUGaUGcUUCuAUGCG- -5'
24680 3' -47.7 NC_005264.1 + 130407 0.69 0.99629
Target:  5'- cGCcGCGUACcgguuccguagaauUUACUugGAAGAgccgaUGCGCg -3'
miRNA:   3'- -CGaUGCGUG--------------AGUGAugCUUCU-----AUGCG- -5'
24680 3' -47.7 NC_005264.1 + 129584 0.69 0.996409
Target:  5'- cUUGCGCGCUCugcaggcGCUGCGgcGcgGCGg -3'
miRNA:   3'- cGAUGCGUGAG-------UGAUGCuuCuaUGCg -5'
24680 3' -47.7 NC_005264.1 + 129136 0.7 0.994335
Target:  5'- uCUACGCGCagaCGCggcuCGGAgcGAUGCGCg -3'
miRNA:   3'- cGAUGCGUGa--GUGau--GCUU--CUAUGCG- -5'
24680 3' -47.7 NC_005264.1 + 127195 0.66 0.999789
Target:  5'- cGCgaaGCGCAgguacaacgugccCUCGCaGCGGuuGGAUAUGCc -3'
miRNA:   3'- -CGa--UGCGU-------------GAGUGaUGCU--UCUAUGCG- -5'
24680 3' -47.7 NC_005264.1 + 123487 0.66 0.999814
Target:  5'- gGCUGCGCgauucugggcgggaaACagUCGC-GCGAGGGU-CGCg -3'
miRNA:   3'- -CGAUGCG---------------UG--AGUGaUGCUUCUAuGCG- -5'
24680 3' -47.7 NC_005264.1 + 120997 0.67 0.999581
Target:  5'- aCUGCGCG-UCAacguaUACGGAGccGCGCu -3'
miRNA:   3'- cGAUGCGUgAGUg----AUGCUUCuaUGCG- -5'
24680 3' -47.7 NC_005264.1 + 120199 0.7 0.992408
Target:  5'- uGCcgGCGCGCg----AUGggGGUACGCa -3'
miRNA:   3'- -CGa-UGCGUGagugaUGCuuCUAUGCG- -5'
24680 3' -47.7 NC_005264.1 + 119414 0.66 0.999737
Target:  5'- uGCUGuacuUGCACUCGCggcugGCGGGcGAUcuCGCu -3'
miRNA:   3'- -CGAU----GCGUGAGUGa----UGCUU-CUAu-GCG- -5'
24680 3' -47.7 NC_005264.1 + 119213 0.68 0.998242
Target:  5'- aGCguaACGCGCgacCAC-GCGAGGuuugGCGCg -3'
miRNA:   3'- -CGa--UGCGUGa--GUGaUGCUUCua--UGCG- -5'
24680 3' -47.7 NC_005264.1 + 119025 0.66 0.999737
Target:  5'- gGUUGCGCGCcaCGCUauaucGCGAcAGAaacUGCGCc -3'
miRNA:   3'- -CGAUGCGUGa-GUGA-----UGCU-UCU---AUGCG- -5'
24680 3' -47.7 NC_005264.1 + 119013 0.7 0.991266
Target:  5'- --aACGUacGCUgGCUACGGAGAUucuguucugcugACGCg -3'
miRNA:   3'- cgaUGCG--UGAgUGAUGCUUCUA------------UGCG- -5'
24680 3' -47.7 NC_005264.1 + 117280 0.7 0.994335
Target:  5'- -gUGCGCGCcgaCACggGCGAAGAUGC-Ca -3'
miRNA:   3'- cgAUGCGUGa--GUGa-UGCUUCUAUGcG- -5'
24680 3' -47.7 NC_005264.1 + 117172 0.66 0.99984
Target:  5'- cGCcACGUGCuUCACUGCGcuug-GCGCc -3'
miRNA:   3'- -CGaUGCGUG-AGUGAUGCuucuaUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.