miRNA display CGI


Results 1 - 20 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24680 3' -47.7 NC_005264.1 + 113359 1.17 0.007136
Target:  5'- cGCUACGCACUCACUACGAAGAUACGCg -3'
miRNA:   3'- -CGAUGCGUGAGUGAUGCUUCUAUGCG- -5'
24680 3' -47.7 NC_005264.1 + 34762 0.71 0.987014
Target:  5'- cGC--CGCugUCGCUacACGAAGAUGagcCGCu -3'
miRNA:   3'- -CGauGCGugAGUGA--UGCUUCUAU---GCG- -5'
24680 3' -47.7 NC_005264.1 + 95083 0.7 0.991266
Target:  5'- aGCcACGCA---ACUGCGAccugcgccgAGAUACGCg -3'
miRNA:   3'- -CGaUGCGUgagUGAUGCU---------UCUAUGCG- -5'
24680 3' -47.7 NC_005264.1 + 92100 0.66 0.999905
Target:  5'- --gGCGCAUuucgUCGCUGCGgcGGcacacaGCGCa -3'
miRNA:   3'- cgaUGCGUG----AGUGAUGCuuCUa-----UGCG- -5'
24680 3' -47.7 NC_005264.1 + 29903 0.74 0.948936
Target:  5'- gGCgUGCgGCGCUaccccgucggCGCUAgGGAGGUACGCg -3'
miRNA:   3'- -CG-AUG-CGUGA----------GUGAUgCUUCUAUGCG- -5'
24680 3' -47.7 NC_005264.1 + 7582 0.74 0.948936
Target:  5'- cCUAcccCGCGC-CGCUGCGGAGAUGCu- -3'
miRNA:   3'- cGAU---GCGUGaGUGAUGCUUCUAUGcg -5'
24680 3' -47.7 NC_005264.1 + 145707 0.73 0.961082
Target:  5'- cCUGCGCGCcCAagcCUACaGAGAUAUGCg -3'
miRNA:   3'- cGAUGCGUGaGU---GAUGcUUCUAUGCG- -5'
24680 3' -47.7 NC_005264.1 + 68116 0.72 0.976604
Target:  5'- aGCgacaagGCGCGCUCAUacucgGCGggGAUGuCGg -3'
miRNA:   3'- -CGa-----UGCGUGAGUGa----UGCuuCUAU-GCg -5'
24680 3' -47.7 NC_005264.1 + 16865 0.71 0.983396
Target:  5'- cGCgcaguuCGUAUUCGCgccgGCGAAGGU-CGCa -3'
miRNA:   3'- -CGau----GCGUGAGUGa---UGCUUCUAuGCG- -5'
24680 3' -47.7 NC_005264.1 + 148348 0.71 0.987014
Target:  5'- cGCgguCGCcCUCuCUGCGAGGAUuuucuucgaagcACGCg -3'
miRNA:   3'- -CGau-GCGuGAGuGAUGCUUCUA------------UGCG- -5'
24680 3' -47.7 NC_005264.1 + 84485 0.71 0.98529
Target:  5'- uGCUACGCucugggcCUUACUAUGGAGAa--GCu -3'
miRNA:   3'- -CGAUGCGu------GAGUGAUGCUUCUaugCG- -5'
24680 3' -47.7 NC_005264.1 + 6501 0.71 0.983396
Target:  5'- uGCUGcCGCACUUGgUaGCGAAGcaGCGCg -3'
miRNA:   3'- -CGAU-GCGUGAGUgA-UGCUUCuaUGCG- -5'
24680 3' -47.7 NC_005264.1 + 94422 0.78 0.81921
Target:  5'- aCUGCGCGaUCGCUgACGuGGGAUGCGCg -3'
miRNA:   3'- cGAUGCGUgAGUGA-UGC-UUCUAUGCG- -5'
24680 3' -47.7 NC_005264.1 + 792 0.71 0.98529
Target:  5'- uGCgguaGCGCUcCAgUACGGcuGGGUGCGCg -3'
miRNA:   3'- -CGaug-CGUGA-GUgAUGCU--UCUAUGCG- -5'
24680 3' -47.7 NC_005264.1 + 157330 0.77 0.836838
Target:  5'- cGUUACGCcUUCGCggaggccgACGAGGGUugGCg -3'
miRNA:   3'- -CGAUGCGuGAGUGa-------UGCUUCUAugCG- -5'
24680 3' -47.7 NC_005264.1 + 39610 0.72 0.981323
Target:  5'- aGCUGCGCGCUUGCUcCu-AGAcacgGCGCu -3'
miRNA:   3'- -CGAUGCGUGAGUGAuGcuUCUa---UGCG- -5'
24680 3' -47.7 NC_005264.1 + 74192 0.71 0.987014
Target:  5'- gGCUcucGCGCAUUCAgaACGAGGGggACGa -3'
miRNA:   3'- -CGA---UGCGUGAGUgaUGCUUCUa-UGCg -5'
24680 3' -47.7 NC_005264.1 + 70156 0.71 0.989993
Target:  5'- cGCggcgGCGC-CUCACUaccgcaauaccuGCGAGGuggACGCc -3'
miRNA:   3'- -CGa---UGCGuGAGUGA------------UGCUUCua-UGCG- -5'
24680 3' -47.7 NC_005264.1 + 67372 0.75 0.929174
Target:  5'- aGCgccCGCGCUCGCUGCGcccgccgGCGCg -3'
miRNA:   3'- -CGau-GCGUGAGUGAUGCuucua--UGCG- -5'
24680 3' -47.7 NC_005264.1 + 59009 0.74 0.953233
Target:  5'- aGCUugGCGCUCA--GCGAAucGA-GCGCa -3'
miRNA:   3'- -CGAugCGUGAGUgaUGCUU--CUaUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.