miRNA display CGI


Results 41 - 60 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24680 3' -47.7 NC_005264.1 + 33044 0.69 0.997482
Target:  5'- aGCUACGCgACUCAgcuaagauaauCUGCGAcGu--CGCg -3'
miRNA:   3'- -CGAUGCG-UGAGU-----------GAUGCUuCuauGCG- -5'
24680 3' -47.7 NC_005264.1 + 34762 0.71 0.987014
Target:  5'- cGC--CGCugUCGCUacACGAAGAUGagcCGCu -3'
miRNA:   3'- -CGauGCGugAGUGA--UGCUUCUAU---GCG- -5'
24680 3' -47.7 NC_005264.1 + 157330 0.77 0.836838
Target:  5'- cGUUACGCcUUCGCggaggccgACGAGGGUugGCg -3'
miRNA:   3'- -CGAUGCGuGAGUGa-------UGCUUCUAugCG- -5'
24680 3' -47.7 NC_005264.1 + 7123 0.69 0.997207
Target:  5'- --cGCGCGUUCACUuucGCGAAGAagggcagccugaggcUACGCc -3'
miRNA:   3'- cgaUGCGUGAGUGA---UGCUUCU---------------AUGCG- -5'
24680 3' -47.7 NC_005264.1 + 94422 0.78 0.81921
Target:  5'- aCUGCGCGaUCGCUgACGuGGGAUGCGCg -3'
miRNA:   3'- cGAUGCGUgAGUGA-UGC-UUCUAUGCG- -5'
24680 3' -47.7 NC_005264.1 + 56160 0.66 0.999794
Target:  5'- uGCUGCGCGuCUCcggguCUAgGggGGcUAgGCu -3'
miRNA:   3'- -CGAUGCGU-GAGu----GAUgCuuCU-AUgCG- -5'
24680 3' -47.7 NC_005264.1 + 29903 0.74 0.948936
Target:  5'- gGCgUGCgGCGCUaccccgucggCGCUAgGGAGGUACGCg -3'
miRNA:   3'- -CG-AUG-CGUGA----------GUGAUgCUUCUAUGCG- -5'
24680 3' -47.7 NC_005264.1 + 119025 0.66 0.999737
Target:  5'- gGUUGCGCGCcaCGCUauaucGCGAcAGAaacUGCGCc -3'
miRNA:   3'- -CGAUGCGUGa-GUGA-----UGCU-UCU---AUGCG- -5'
24680 3' -47.7 NC_005264.1 + 83985 0.67 0.999667
Target:  5'- --gACGCGCUaCACUugGAacaauGGccgACGCu -3'
miRNA:   3'- cgaUGCGUGA-GUGAugCU-----UCua-UGCG- -5'
24680 3' -47.7 NC_005264.1 + 42444 0.68 0.999092
Target:  5'- cGCUGCgGCACUCGCgcuCGAAuguuucugcucuagcGAacaugGCGCu -3'
miRNA:   3'- -CGAUG-CGUGAGUGau-GCUU---------------CUa----UGCG- -5'
24680 3' -47.7 NC_005264.1 + 156509 0.68 0.998798
Target:  5'- cGCguauCGCACa-GCUACGggGGcuCGCg -3'
miRNA:   3'- -CGau--GCGUGagUGAUGCuuCUauGCG- -5'
24680 3' -47.7 NC_005264.1 + 70568 0.68 0.998542
Target:  5'- aGCUACGagaUCuACgugGCGAAGA-GCGCg -3'
miRNA:   3'- -CGAUGCgugAG-UGa--UGCUUCUaUGCG- -5'
24680 3' -47.7 NC_005264.1 + 115947 0.69 0.997482
Target:  5'- cGCg--GCGCagGCUA-GGAGGUACGCg -3'
miRNA:   3'- -CGaugCGUGagUGAUgCUUCUAUGCG- -5'
24680 3' -47.7 NC_005264.1 + 58626 0.69 0.995846
Target:  5'- gGCUGCGCGuaggauaacggUUUACUGUGAAGGgcggACGCc -3'
miRNA:   3'- -CGAUGCGU-----------GAGUGAUGCUUCUa---UGCG- -5'
24680 3' -47.7 NC_005264.1 + 49334 0.7 0.995138
Target:  5'- gGCUGuuCGCGCUCGgccCGGAGGaACGCg -3'
miRNA:   3'- -CGAU--GCGUGAGUgauGCUUCUaUGCG- -5'
24680 3' -47.7 NC_005264.1 + 157160 0.7 0.992408
Target:  5'- --cGCGCGCUCugUACucguGGGaACGCa -3'
miRNA:   3'- cgaUGCGUGAGugAUGcu--UCUaUGCG- -5'
24680 3' -47.7 NC_005264.1 + 95083 0.7 0.991266
Target:  5'- aGCcACGCA---ACUGCGAccugcgccgAGAUACGCg -3'
miRNA:   3'- -CGaUGCGUgagUGAUGCU---------UCUAUGCG- -5'
24680 3' -47.7 NC_005264.1 + 792 0.71 0.98529
Target:  5'- uGCgguaGCGCUcCAgUACGGcuGGGUGCGCg -3'
miRNA:   3'- -CGaug-CGUGA-GUgAUGCU--UCUAUGCG- -5'
24680 3' -47.7 NC_005264.1 + 16865 0.71 0.983396
Target:  5'- cGCgcaguuCGUAUUCGCgccgGCGAAGGU-CGCa -3'
miRNA:   3'- -CGau----GCGUGAGUGa---UGCUUCUAuGCG- -5'
24680 3' -47.7 NC_005264.1 + 145707 0.73 0.961082
Target:  5'- cCUGCGCGCcCAagcCUACaGAGAUAUGCg -3'
miRNA:   3'- cGAUGCGUGaGU---GAUGcUUCUAUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.