miRNA display CGI


Results 1 - 20 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24680 5' -55.1 NC_005264.1 + 147094 0.66 0.940127
Target:  5'- cGCGCGCACAcauaaUCaAGCcaGGCcGCcGUGCc -3'
miRNA:   3'- -CGCGCGUGUa----AGaUCG--UCG-CGaCGCG- -5'
24680 5' -55.1 NC_005264.1 + 94153 0.66 0.940127
Target:  5'- cUGCGaguuCAUcUCUggAGCAGCGUccccUGCGCa -3'
miRNA:   3'- cGCGCgu--GUA-AGA--UCGUCGCG----ACGCG- -5'
24680 5' -55.1 NC_005264.1 + 60245 0.66 0.939653
Target:  5'- aGCGCGC-CAUguauGCGGUcacgcgaGCUGCGg -3'
miRNA:   3'- -CGCGCGuGUAagauCGUCG-------CGACGCg -5'
24680 5' -55.1 NC_005264.1 + 9883 0.66 0.938215
Target:  5'- gGCGCGcCACGgccuucccagccCUGGCGGCagaaagGCgGCGCu -3'
miRNA:   3'- -CGCGC-GUGUaa----------GAUCGUCG------CGaCGCG- -5'
24680 5' -55.1 NC_005264.1 + 128909 0.66 0.938215
Target:  5'- gGCGCGcCACGgccuucccagccCUGGCGGCagaaagGCgGCGCu -3'
miRNA:   3'- -CGCGC-GUGUaa----------GAUCGUCG------CGaCGCG- -5'
24680 5' -55.1 NC_005264.1 + 19831 0.66 0.937244
Target:  5'- cGCGUcCACAUaaacgggCUAGUAGUGUaacaguccuccagcuUGCGCg -3'
miRNA:   3'- -CGCGcGUGUAa------GAUCGUCGCG---------------ACGCG- -5'
24680 5' -55.1 NC_005264.1 + 26951 0.66 0.935273
Target:  5'- cGCGUGCGCAUc---GCAGUgGCUugGCGUa -3'
miRNA:   3'- -CGCGCGUGUAagauCGUCG-CGA--CGCG- -5'
24680 5' -55.1 NC_005264.1 + 115947 0.66 0.935273
Target:  5'- cGCG-GCGCAggCUAGgAGguaCGCgGCGCc -3'
miRNA:   3'- -CGCgCGUGUaaGAUCgUC---GCGaCGCG- -5'
24680 5' -55.1 NC_005264.1 + 49443 0.66 0.935273
Target:  5'- aGCGCaGCGCug-CUAGaauGUGC-GCGCu -3'
miRNA:   3'- -CGCG-CGUGuaaGAUCgu-CGCGaCGCG- -5'
24680 5' -55.1 NC_005264.1 + 60533 0.66 0.935273
Target:  5'- gGCGCaGC-CAUugcgcUCUGGCAcGC-CUGUGCc -3'
miRNA:   3'- -CGCG-CGuGUA-----AGAUCGU-CGcGACGCG- -5'
24680 5' -55.1 NC_005264.1 + 61430 0.66 0.935273
Target:  5'- gGCGCGCugGUggUAuucaUAGUGCUGgGCc -3'
miRNA:   3'- -CGCGCGugUAagAUc---GUCGCGACgCG- -5'
24680 5' -55.1 NC_005264.1 + 69351 0.66 0.935273
Target:  5'- aCGCGC-CGgccgCcAGCAGCGCcucagacaGCGCg -3'
miRNA:   3'- cGCGCGuGUaa--GaUCGUCGCGa-------CGCG- -5'
24680 5' -55.1 NC_005264.1 + 80786 0.66 0.935273
Target:  5'- cCGCGC----UCUAGaggaGGCGCgccUGCGCa -3'
miRNA:   3'- cGCGCGuguaAGAUCg---UCGCG---ACGCG- -5'
24680 5' -55.1 NC_005264.1 + 89782 0.66 0.930176
Target:  5'- aCGC-CACGUcUCUGGCcgcauaccgccGGCGCUuuccGCGCu -3'
miRNA:   3'- cGCGcGUGUA-AGAUCG-----------UCGCGA----CGCG- -5'
24680 5' -55.1 NC_005264.1 + 58506 0.66 0.930176
Target:  5'- aGCG-GCACcuccUCguaAGCGGCGUcGCGCc -3'
miRNA:   3'- -CGCgCGUGua--AGa--UCGUCGCGaCGCG- -5'
24680 5' -55.1 NC_005264.1 + 33484 0.66 0.930176
Target:  5'- cCGCGCACucguguaUUGGCuauuCGUUGCGCg -3'
miRNA:   3'- cGCGCGUGuaa----GAUCGuc--GCGACGCG- -5'
24680 5' -55.1 NC_005264.1 + 161140 0.66 0.930176
Target:  5'- aCGgGCAC---CUGGCAGgGUgUGCGCu -3'
miRNA:   3'- cGCgCGUGuaaGAUCGUCgCG-ACGCG- -5'
24680 5' -55.1 NC_005264.1 + 42113 0.66 0.930176
Target:  5'- aCGgGCAC---CUGGCAGgGUgUGCGCu -3'
miRNA:   3'- cGCgCGUGuaaGAUCGUCgCG-ACGCG- -5'
24680 5' -55.1 NC_005264.1 + 146946 0.66 0.930176
Target:  5'- -gGCGCAgAggCUGGaUGGCGCUGaggcCGCa -3'
miRNA:   3'- cgCGCGUgUaaGAUC-GUCGCGAC----GCG- -5'
24680 5' -55.1 NC_005264.1 + 155947 0.66 0.930176
Target:  5'- cGCGCGCugGgaCUGcGCGGCucGCgGaCGCu -3'
miRNA:   3'- -CGCGCGugUaaGAU-CGUCG--CGaC-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.