miRNA display CGI


Results 1 - 20 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24680 5' -55.1 NC_005264.1 + 94153 0.66 0.940127
Target:  5'- cUGCGaguuCAUcUCUggAGCAGCGUccccUGCGCa -3'
miRNA:   3'- cGCGCgu--GUA-AGA--UCGUCGCG----ACGCG- -5'
24680 5' -55.1 NC_005264.1 + 83231 0.66 0.929653
Target:  5'- uGCGCGUggGCG-UCUAggccgccGCugauGCGCUGgCGCg -3'
miRNA:   3'- -CGCGCG--UGUaAGAU-------CGu---CGCGAC-GCG- -5'
24680 5' -55.1 NC_005264.1 + 74456 0.66 0.9286
Target:  5'- uCGCGgGCAUgcggCUGGCcgugaauccuAGCcccaugucuacgugGCUGCGCg -3'
miRNA:   3'- cGCGCgUGUAa---GAUCG----------UCG--------------CGACGCG- -5'
24680 5' -55.1 NC_005264.1 + 100007 0.66 0.924836
Target:  5'- aCGCGaCGCGgaaaUaaagaaggccgcGGCGGCGCUGCuGCg -3'
miRNA:   3'- cGCGC-GUGUaag-A------------UCGUCGCGACG-CG- -5'
24680 5' -55.1 NC_005264.1 + 52955 0.66 0.924836
Target:  5'- aUGCaGCGCc-UCUacgcGGCGGUGCUGCGa -3'
miRNA:   3'- cGCG-CGUGuaAGA----UCGUCGCGACGCg -5'
24680 5' -55.1 NC_005264.1 + 28320 0.66 0.924288
Target:  5'- cGCGCGCcuACG-UCUAGuCGGUaucggcacgacuuGCcUGCGCg -3'
miRNA:   3'- -CGCGCG--UGUaAGAUC-GUCG-------------CG-ACGCG- -5'
24680 5' -55.1 NC_005264.1 + 45744 0.66 0.919252
Target:  5'- cGCGCGguCGUgccguaUCUAGCacacagacAGCGauggGCGCc -3'
miRNA:   3'- -CGCGCguGUA------AGAUCG--------UCGCga--CGCG- -5'
24680 5' -55.1 NC_005264.1 + 113379 0.66 0.919252
Target:  5'- gGCGCGgGuCAgggUUAuGCAGgcgaGCUGCGCg -3'
miRNA:   3'- -CGCGCgU-GUaa-GAU-CGUCg---CGACGCG- -5'
24680 5' -55.1 NC_005264.1 + 73366 0.66 0.919252
Target:  5'- aGCGCGCcuuucuuugucuGCGgcgaaaUGGUAGCGCgGCGg -3'
miRNA:   3'- -CGCGCG------------UGUaag---AUCGUCGCGaCGCg -5'
24680 5' -55.1 NC_005264.1 + 42113 0.66 0.930176
Target:  5'- aCGgGCAC---CUGGCAGgGUgUGCGCu -3'
miRNA:   3'- cGCgCGUGuaaGAUCGUCgCG-ACGCG- -5'
24680 5' -55.1 NC_005264.1 + 146946 0.66 0.930176
Target:  5'- -gGCGCAgAggCUGGaUGGCGCUGaggcCGCa -3'
miRNA:   3'- cgCGCGUgUaaGAUC-GUCGCGAC----GCG- -5'
24680 5' -55.1 NC_005264.1 + 58480 0.66 0.930176
Target:  5'- cCGCGCgACAUUaacGCAuGCGCgcaagaGCGCg -3'
miRNA:   3'- cGCGCG-UGUAAgauCGU-CGCGa-----CGCG- -5'
24680 5' -55.1 NC_005264.1 + 9883 0.66 0.938215
Target:  5'- gGCGCGcCACGgccuucccagccCUGGCGGCagaaagGCgGCGCu -3'
miRNA:   3'- -CGCGC-GUGUaa----------GAUCGUCG------CGaCGCG- -5'
24680 5' -55.1 NC_005264.1 + 19831 0.66 0.937244
Target:  5'- cGCGUcCACAUaaacgggCUAGUAGUGUaacaguccuccagcuUGCGCg -3'
miRNA:   3'- -CGCGcGUGUAa------GAUCGUCGCG---------------ACGCG- -5'
24680 5' -55.1 NC_005264.1 + 80786 0.66 0.935273
Target:  5'- cCGCGC----UCUAGaggaGGCGCgccUGCGCa -3'
miRNA:   3'- cGCGCGuguaAGAUCg---UCGCG---ACGCG- -5'
24680 5' -55.1 NC_005264.1 + 69351 0.66 0.935273
Target:  5'- aCGCGC-CGgccgCcAGCAGCGCcucagacaGCGCg -3'
miRNA:   3'- cGCGCGuGUaa--GaUCGUCGCGa-------CGCG- -5'
24680 5' -55.1 NC_005264.1 + 61430 0.66 0.935273
Target:  5'- gGCGCGCugGUggUAuucaUAGUGCUGgGCc -3'
miRNA:   3'- -CGCGCGugUAagAUc---GUCGCGACgCG- -5'
24680 5' -55.1 NC_005264.1 + 60533 0.66 0.935273
Target:  5'- gGCGCaGC-CAUugcgcUCUGGCAcGC-CUGUGCc -3'
miRNA:   3'- -CGCG-CGuGUA-----AGAUCGU-CGcGACGCG- -5'
24680 5' -55.1 NC_005264.1 + 49443 0.66 0.935273
Target:  5'- aGCGCaGCGCug-CUAGaauGUGC-GCGCu -3'
miRNA:   3'- -CGCG-CGUGuaaGAUCgu-CGCGaCGCG- -5'
24680 5' -55.1 NC_005264.1 + 155947 0.66 0.930176
Target:  5'- cGCGCGCugGgaCUGcGCGGCucGCgGaCGCu -3'
miRNA:   3'- -CGCGCGugUaaGAU-CGUCG--CGaC-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.