miRNA display CGI


Results 41 - 60 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24680 5' -55.1 NC_005264.1 + 19831 0.66 0.937244
Target:  5'- cGCGUcCACAUaaacgggCUAGUAGUGUaacaguccuccagcuUGCGCg -3'
miRNA:   3'- -CGCGcGUGUAa------GAUCGUCGCG---------------ACGCG- -5'
24680 5' -55.1 NC_005264.1 + 9883 0.66 0.938215
Target:  5'- gGCGCGcCACGgccuucccagccCUGGCGGCagaaagGCgGCGCu -3'
miRNA:   3'- -CGCGC-GUGUaa----------GAUCGUCG------CGaCGCG- -5'
24680 5' -55.1 NC_005264.1 + 74456 0.66 0.9286
Target:  5'- uCGCGgGCAUgcggCUGGCcgugaauccuAGCcccaugucuacgugGCUGCGCg -3'
miRNA:   3'- cGCGCgUGUAa---GAUCG----------UCG--------------CGACGCG- -5'
24680 5' -55.1 NC_005264.1 + 100007 0.66 0.924836
Target:  5'- aCGCGaCGCGgaaaUaaagaaggccgcGGCGGCGCUGCuGCg -3'
miRNA:   3'- cGCGC-GUGUaag-A------------UCGUCGCGACG-CG- -5'
24680 5' -55.1 NC_005264.1 + 134789 0.66 0.913425
Target:  5'- cCGCGCGC-UUUUAccCGGCGUcGCGCg -3'
miRNA:   3'- cGCGCGUGuAAGAUc-GUCGCGaCGCG- -5'
24680 5' -55.1 NC_005264.1 + 81082 0.66 0.91868
Target:  5'- uGCGCGCACGUcucgugcuUCUugccgccagaaucGGUAcGCGUgGCGUg -3'
miRNA:   3'- -CGCGCGUGUA--------AGA-------------UCGU-CGCGaCGCG- -5'
24680 5' -55.1 NC_005264.1 + 131576 0.66 0.91868
Target:  5'- uGCGCgGCACcuggcgccuagguGUggagggAGCGGCGCgcguggGCGCg -3'
miRNA:   3'- -CGCG-CGUG-------------UAaga---UCGUCGCGa-----CGCG- -5'
24680 5' -55.1 NC_005264.1 + 15927 0.66 0.919252
Target:  5'- gGUGUGCGCGUg--AGUuucgAGCGUcgguuUGCGCg -3'
miRNA:   3'- -CGCGCGUGUAagaUCG----UCGCG-----ACGCG- -5'
24680 5' -55.1 NC_005264.1 + 43800 0.66 0.919252
Target:  5'- gGgGCGCAguUUCUGucGCgauauAGCGUgGCGCg -3'
miRNA:   3'- -CgCGCGUguAAGAU--CG-----UCGCGaCGCG- -5'
24680 5' -55.1 NC_005264.1 + 31672 0.66 0.919252
Target:  5'- uGCGCGagGCAgggcUCUcGGCGGgGCUGCccGCc -3'
miRNA:   3'- -CGCGCg-UGUa---AGA-UCGUCgCGACG--CG- -5'
24680 5' -55.1 NC_005264.1 + 56906 0.66 0.919252
Target:  5'- uGgGCGaGCAUUauggGGCGGCGUacgUGCGUg -3'
miRNA:   3'- -CgCGCgUGUAAga--UCGUCGCG---ACGCG- -5'
24680 5' -55.1 NC_005264.1 + 73366 0.66 0.919252
Target:  5'- aGCGCGCcuuucuuugucuGCGgcgaaaUGGUAGCGCgGCGg -3'
miRNA:   3'- -CGCGCG------------UGUaag---AUCGUCGCGaCGCg -5'
24680 5' -55.1 NC_005264.1 + 52955 0.66 0.924836
Target:  5'- aUGCaGCGCc-UCUacgcGGCGGUGCUGCGa -3'
miRNA:   3'- cGCG-CGUGuaAGA----UCGUCGCGACGCg -5'
24680 5' -55.1 NC_005264.1 + 28320 0.66 0.924288
Target:  5'- cGCGCGCcuACG-UCUAGuCGGUaucggcacgacuuGCcUGCGCg -3'
miRNA:   3'- -CGCGCG--UGUaAGAUC-GUCG-------------CG-ACGCG- -5'
24680 5' -55.1 NC_005264.1 + 45744 0.66 0.919252
Target:  5'- cGCGCGguCGUgccguaUCUAGCacacagacAGCGauggGCGCc -3'
miRNA:   3'- -CGCGCguGUA------AGAUCG--------UCGCga--CGCG- -5'
24680 5' -55.1 NC_005264.1 + 113379 0.66 0.919252
Target:  5'- gGCGCGgGuCAgggUUAuGCAGgcgaGCUGCGCg -3'
miRNA:   3'- -CGCGCgU-GUaa-GAU-CGUCg---CGACGCG- -5'
24680 5' -55.1 NC_005264.1 + 147094 0.66 0.940127
Target:  5'- cGCGCGCACAcauaaUCaAGCcaGGCcGCcGUGCc -3'
miRNA:   3'- -CGCGCGUGUa----AGaUCG--UCG-CGaCGCG- -5'
24680 5' -55.1 NC_005264.1 + 77023 0.67 0.907357
Target:  5'- aGCGCGCGC-UUCUuggucacAGaCAGCGacgacccggaagagGCGCg -3'
miRNA:   3'- -CGCGCGUGuAAGA-------UC-GUCGCga------------CGCG- -5'
24680 5' -55.1 NC_005264.1 + 136463 0.67 0.901049
Target:  5'- cCGCGCuCAg---AGaCGGCGCcGCGCa -3'
miRNA:   3'- cGCGCGuGUaagaUC-GUCGCGaCGCG- -5'
24680 5' -55.1 NC_005264.1 + 159793 0.67 0.906114
Target:  5'- aGCGUGC-CAguuaggagacgC-AGCGGCGCUGCa- -3'
miRNA:   3'- -CGCGCGuGUaa---------GaUCGUCGCGACGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.