miRNA display CGI


Results 21 - 40 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24680 5' -55.1 NC_005264.1 + 87529 0.72 0.620405
Target:  5'- gGCGCGCgGCAgaugCU-GCAGCGUggGCGUa -3'
miRNA:   3'- -CGCGCG-UGUaa--GAuCGUCGCGa-CGCG- -5'
24680 5' -55.1 NC_005264.1 + 46892 0.72 0.671971
Target:  5'- cCGCGUACcucCUAGCuGCGCcGCGUg -3'
miRNA:   3'- cGCGCGUGuaaGAUCGuCGCGaCGCG- -5'
24680 5' -55.1 NC_005264.1 + 84301 0.72 0.621438
Target:  5'- aGCGCGCAUAgcguaaacaagacgCcAGCGGCGCguacccaGCGCg -3'
miRNA:   3'- -CGCGCGUGUaa------------GaUCGUCGCGa------CGCG- -5'
24680 5' -55.1 NC_005264.1 + 34259 0.72 0.66169
Target:  5'- cGUGCGCGCGguaaUCc-GC-GUGCUGCGCu -3'
miRNA:   3'- -CGCGCGUGUa---AGauCGuCGCGACGCG- -5'
24680 5' -55.1 NC_005264.1 + 6517 0.72 0.641062
Target:  5'- aGCGaagcaGCGCGUUU--GCAGCGCcGCGUa -3'
miRNA:   3'- -CGCg----CGUGUAAGauCGUCGCGaCGCG- -5'
24680 5' -55.1 NC_005264.1 + 61485 0.72 0.630733
Target:  5'- aGCGCGCcgacgcgccccGCggUCUcGGCuAGCGCcGCGCg -3'
miRNA:   3'- -CGCGCG-----------UGuaAGA-UCG-UCGCGaCGCG- -5'
24680 5' -55.1 NC_005264.1 + 40373 0.71 0.702582
Target:  5'- cGUG-GCGC-UUUgcgAGCAGCGCggGCGCg -3'
miRNA:   3'- -CGCgCGUGuAAGa--UCGUCGCGa-CGCG- -5'
24680 5' -55.1 NC_005264.1 + 103956 0.71 0.712677
Target:  5'- aUGCGCGaa--CgcGUGGCGCUGCGCa -3'
miRNA:   3'- cGCGCGUguaaGauCGUCGCGACGCG- -5'
24680 5' -55.1 NC_005264.1 + 112273 0.71 0.702582
Target:  5'- cGCGUGCGC-UUCccGCAcGCGC-GCGCc -3'
miRNA:   3'- -CGCGCGUGuAAGauCGU-CGCGaCGCG- -5'
24680 5' -55.1 NC_005264.1 + 81739 0.71 0.68222
Target:  5'- aCGCGUACcgAUUCUGGCGGCaagaaGCacgagacgUGCGCg -3'
miRNA:   3'- cGCGCGUG--UAAGAUCGUCG-----CG--------ACGCG- -5'
24680 5' -55.1 NC_005264.1 + 148497 0.71 0.702582
Target:  5'- aCGCGCugGUcgcgUUGGCGGCGa-GCGCc -3'
miRNA:   3'- cGCGCGugUAa---GAUCGUCGCgaCGCG- -5'
24680 5' -55.1 NC_005264.1 + 159400 0.71 0.702582
Target:  5'- cGUG-GCGC-UUUgcgAGCAGCGCggGCGCg -3'
miRNA:   3'- -CGCgCGUGuAAGa--UCGUCGCGa-CGCG- -5'
24680 5' -55.1 NC_005264.1 + 129499 0.71 0.712677
Target:  5'- gGCG-GCGCAgggUUUGGCGGCGCcggagGCGa -3'
miRNA:   3'- -CGCgCGUGUa--AGAUCGUCGCGa----CGCg -5'
24680 5' -55.1 NC_005264.1 + 75690 0.71 0.68222
Target:  5'- cGCGCaGCGCcgUCUuuCGGCGCgaagacuggUGCGCc -3'
miRNA:   3'- -CGCG-CGUGuaAGAucGUCGCG---------ACGCG- -5'
24680 5' -55.1 NC_005264.1 + 33695 0.71 0.722703
Target:  5'- aCGCGCAuCGcUCcgAGCcGCGuCUGCGCg -3'
miRNA:   3'- cGCGCGU-GUaAGa-UCGuCGC-GACGCG- -5'
24680 5' -55.1 NC_005264.1 + 59156 0.71 0.706628
Target:  5'- aGCGCGagaAUAgcgcucuaugguggUCUAGCAacGCGCUGCuGCa -3'
miRNA:   3'- -CGCGCg--UGUa-------------AGAUCGU--CGCGACG-CG- -5'
24680 5' -55.1 NC_005264.1 + 98040 0.7 0.780857
Target:  5'- cUGCGCuucCGgugcccaUGGgGGCGCUGCGCg -3'
miRNA:   3'- cGCGCGu--GUaag----AUCgUCGCGACGCG- -5'
24680 5' -55.1 NC_005264.1 + 156164 0.7 0.742506
Target:  5'- aGgGCGCAUAUgcgcggCUuuGCGGCGUggcgGCGCc -3'
miRNA:   3'- -CgCGCGUGUAa-----GAu-CGUCGCGa---CGCG- -5'
24680 5' -55.1 NC_005264.1 + 52873 0.7 0.752265
Target:  5'- aCGUGCACAcgCgcgAGCgaGGgGCUGCGUg -3'
miRNA:   3'- cGCGCGUGUaaGa--UCG--UCgCGACGCG- -5'
24680 5' -55.1 NC_005264.1 + 29265 0.7 0.732648
Target:  5'- gGCGCGCAgAUUgUUGGacuguGCGCggGCGCg -3'
miRNA:   3'- -CGCGCGUgUAA-GAUCgu---CGCGa-CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.