miRNA display CGI


Results 1 - 20 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24680 5' -55.1 NC_005264.1 + 113394 1.14 0.001651
Target:  5'- aGCGCGCACAUUCUAGCAGCGCUGCGCu -3'
miRNA:   3'- -CGCGCGUGUAAGAUCGUCGCGACGCG- -5'
24680 5' -55.1 NC_005264.1 + 75076 0.8 0.276768
Target:  5'- gGC-CGCugGUUCUucGCGGCGCUGCGg -3'
miRNA:   3'- -CGcGCGugUAAGAu-CGUCGCGACGCg -5'
24680 5' -55.1 NC_005264.1 + 87135 0.78 0.356791
Target:  5'- gGgGCGCACcagUCUucgcgccgaaAGaCGGCGCUGCGCg -3'
miRNA:   3'- -CgCGCGUGua-AGA----------UC-GUCGCGACGCG- -5'
24680 5' -55.1 NC_005264.1 + 94603 0.77 0.381259
Target:  5'- gGCGCGgGCAUggcUUGGCGGUGCgGCGUg -3'
miRNA:   3'- -CGCGCgUGUAa--GAUCGUCGCGaCGCG- -5'
24680 5' -55.1 NC_005264.1 + 50565 0.76 0.424449
Target:  5'- gGCGCGCGCGUgcgggaagCgcacGCGGCGCUGaGCa -3'
miRNA:   3'- -CGCGCGUGUAa-------Gau--CGUCGCGACgCG- -5'
24680 5' -55.1 NC_005264.1 + 143384 0.76 0.450801
Target:  5'- cGCGCGCAUAUaCUGGUgccgaugAGCGCcucGCGCc -3'
miRNA:   3'- -CGCGCGUGUAaGAUCG-------UCGCGa--CGCG- -5'
24680 5' -55.1 NC_005264.1 + 23282 0.75 0.470433
Target:  5'- cGCGCGCGCGU----GCAGCGa-GCGCa -3'
miRNA:   3'- -CGCGCGUGUAagauCGUCGCgaCGCG- -5'
24680 5' -55.1 NC_005264.1 + 94400 0.75 0.489526
Target:  5'- cCGCGCGCAgacc-GCGGCGCggacUGCGCg -3'
miRNA:   3'- cGCGCGUGUaagauCGUCGCG----ACGCG- -5'
24680 5' -55.1 NC_005264.1 + 16511 0.74 0.548781
Target:  5'- gGCGCGCACGccgagagUCaggaUAGCucuuAGCGCuUGCGCg -3'
miRNA:   3'- -CGCGCGUGUa------AG----AUCG----UCGCG-ACGCG- -5'
24680 5' -55.1 NC_005264.1 + 79447 0.74 0.558891
Target:  5'- cGCgGCGCGCAgaCgacgAGCGGCaGCUGgGCu -3'
miRNA:   3'- -CG-CGCGUGUaaGa---UCGUCG-CGACgCG- -5'
24680 5' -55.1 NC_005264.1 + 4768 0.74 0.558891
Target:  5'- aUGUGCGCcUUCUGcGCGGCGCcguucGCGCa -3'
miRNA:   3'- cGCGCGUGuAAGAU-CGUCGCGa----CGCG- -5'
24680 5' -55.1 NC_005264.1 + 48349 0.73 0.579261
Target:  5'- -gGCGCACGccaUGGCGGCcucGUUGCGCa -3'
miRNA:   3'- cgCGCGUGUaagAUCGUCG---CGACGCG- -5'
24680 5' -55.1 NC_005264.1 + 34098 0.73 0.593615
Target:  5'- gGCGgGCACAauggCUcAGCGGCGCgaaacagcgucgagGCGCg -3'
miRNA:   3'- -CGCgCGUGUaa--GA-UCGUCGCGa-------------CGCG- -5'
24680 5' -55.1 NC_005264.1 + 153125 0.73 0.593615
Target:  5'- gGCGgGCACAauggCUcAGCGGCGCgaaacagcgucgagGCGCg -3'
miRNA:   3'- -CGCgCGUGUaa--GA-UCGUCGCGa-------------CGCG- -5'
24680 5' -55.1 NC_005264.1 + 121184 0.73 0.598756
Target:  5'- aUGCGCACGUcCUuagacccGGCcGCGCUGcCGCa -3'
miRNA:   3'- cGCGCGUGUAaGA-------UCGuCGCGAC-GCG- -5'
24680 5' -55.1 NC_005264.1 + 87529 0.72 0.620405
Target:  5'- gGCGCGCgGCAgaugCU-GCAGCGUggGCGUa -3'
miRNA:   3'- -CGCGCG-UGUaa--GAuCGUCGCGa-CGCG- -5'
24680 5' -55.1 NC_005264.1 + 84301 0.72 0.621438
Target:  5'- aGCGCGCAUAgcguaaacaagacgCcAGCGGCGCguacccaGCGCg -3'
miRNA:   3'- -CGCGCGUGUaa------------GaUCGUCGCGa------CGCG- -5'
24680 5' -55.1 NC_005264.1 + 154927 0.72 0.624536
Target:  5'- aCGCGCGCGUUgCUAGCcagAGCGUgggggacgucguacGCGCg -3'
miRNA:   3'- cGCGCGUGUAA-GAUCG---UCGCGa-------------CGCG- -5'
24680 5' -55.1 NC_005264.1 + 61485 0.72 0.630733
Target:  5'- aGCGCGCcgacgcgccccGCggUCUcGGCuAGCGCcGCGCg -3'
miRNA:   3'- -CGCGCG-----------UGuaAGA-UCG-UCGCGaCGCG- -5'
24680 5' -55.1 NC_005264.1 + 6517 0.72 0.641062
Target:  5'- aGCGaagcaGCGCGUUU--GCAGCGCcGCGUa -3'
miRNA:   3'- -CGCg----CGUGUAAGauCGUCGCGaCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.