Results 21 - 40 of 191 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24680 | 5' | -55.1 | NC_005264.1 | + | 136899 | 0.72 | 0.66169 |
Target: 5'- gGCGCGUACGUg--AGCcGCGUcGUGCa -3' miRNA: 3'- -CGCGCGUGUAagaUCGuCGCGaCGCG- -5' |
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24680 | 5' | -55.1 | NC_005264.1 | + | 34259 | 0.72 | 0.66169 |
Target: 5'- cGUGCGCGCGguaaUCc-GC-GUGCUGCGCu -3' miRNA: 3'- -CGCGCGUGUa---AGauCGuCGCGACGCG- -5' |
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24680 | 5' | -55.1 | NC_005264.1 | + | 129586 | 0.72 | 0.66169 |
Target: 5'- uGCGCGCucuGCAggCgcuGCGGCGCgGCGg -3' miRNA: 3'- -CGCGCG---UGUaaGau-CGUCGCGaCGCg -5' |
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24680 | 5' | -55.1 | NC_005264.1 | + | 162682 | 0.72 | 0.671971 |
Target: 5'- -gGUGUACggUC-GGC-GCGCUGCGCg -3' miRNA: 3'- cgCGCGUGuaAGaUCGuCGCGACGCG- -5' |
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24680 | 5' | -55.1 | NC_005264.1 | + | 46892 | 0.72 | 0.671971 |
Target: 5'- cCGCGUACcucCUAGCuGCGCcGCGUg -3' miRNA: 3'- cGCGCGUGuaaGAUCGuCGCGaCGCG- -5' |
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24680 | 5' | -55.1 | NC_005264.1 | + | 43656 | 0.72 | 0.671971 |
Target: 5'- -gGUGUACggUC-GGC-GCGCUGCGCg -3' miRNA: 3'- cgCGCGUGuaAGaUCGuCGCGACGCG- -5' |
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24680 | 5' | -55.1 | NC_005264.1 | + | 75690 | 0.71 | 0.68222 |
Target: 5'- cGCGCaGCGCcgUCUuuCGGCGCgaagacuggUGCGCc -3' miRNA: 3'- -CGCG-CGUGuaAGAucGUCGCG---------ACGCG- -5' |
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24680 | 5' | -55.1 | NC_005264.1 | + | 81739 | 0.71 | 0.68222 |
Target: 5'- aCGCGUACcgAUUCUGGCGGCaagaaGCacgagacgUGCGCg -3' miRNA: 3'- cGCGCGUG--UAAGAUCGUCG-----CG--------ACGCG- -5' |
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24680 | 5' | -55.1 | NC_005264.1 | + | 148497 | 0.71 | 0.702582 |
Target: 5'- aCGCGCugGUcgcgUUGGCGGCGa-GCGCc -3' miRNA: 3'- cGCGCGugUAa---GAUCGUCGCgaCGCG- -5' |
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24680 | 5' | -55.1 | NC_005264.1 | + | 112273 | 0.71 | 0.702582 |
Target: 5'- cGCGUGCGC-UUCccGCAcGCGC-GCGCc -3' miRNA: 3'- -CGCGCGUGuAAGauCGU-CGCGaCGCG- -5' |
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24680 | 5' | -55.1 | NC_005264.1 | + | 40373 | 0.71 | 0.702582 |
Target: 5'- cGUG-GCGC-UUUgcgAGCAGCGCggGCGCg -3' miRNA: 3'- -CGCgCGUGuAAGa--UCGUCGCGa-CGCG- -5' |
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24680 | 5' | -55.1 | NC_005264.1 | + | 159400 | 0.71 | 0.702582 |
Target: 5'- cGUG-GCGC-UUUgcgAGCAGCGCggGCGCg -3' miRNA: 3'- -CGCgCGUGuAAGa--UCGUCGCGa-CGCG- -5' |
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24680 | 5' | -55.1 | NC_005264.1 | + | 59156 | 0.71 | 0.706628 |
Target: 5'- aGCGCGagaAUAgcgcucuaugguggUCUAGCAacGCGCUGCuGCa -3' miRNA: 3'- -CGCGCg--UGUa-------------AGAUCGU--CGCGACG-CG- -5' |
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24680 | 5' | -55.1 | NC_005264.1 | + | 103956 | 0.71 | 0.712677 |
Target: 5'- aUGCGCGaa--CgcGUGGCGCUGCGCa -3' miRNA: 3'- cGCGCGUguaaGauCGUCGCGACGCG- -5' |
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24680 | 5' | -55.1 | NC_005264.1 | + | 129499 | 0.71 | 0.712677 |
Target: 5'- gGCG-GCGCAgggUUUGGCGGCGCcggagGCGa -3' miRNA: 3'- -CGCgCGUGUa--AGAUCGUCGCGa----CGCg -5' |
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24680 | 5' | -55.1 | NC_005264.1 | + | 33695 | 0.71 | 0.722703 |
Target: 5'- aCGCGCAuCGcUCcgAGCcGCGuCUGCGCg -3' miRNA: 3'- cGCGCGU-GUaAGa-UCGuCGC-GACGCG- -5' |
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24680 | 5' | -55.1 | NC_005264.1 | + | 93574 | 0.7 | 0.732648 |
Target: 5'- uCGCGCGCcccaUGGCAGCGgaugagGCGCg -3' miRNA: 3'- cGCGCGUGuaagAUCGUCGCga----CGCG- -5' |
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24680 | 5' | -55.1 | NC_005264.1 | + | 29265 | 0.7 | 0.732648 |
Target: 5'- gGCGCGCAgAUUgUUGGacuguGCGCggGCGCg -3' miRNA: 3'- -CGCGCGUgUAA-GAUCgu---CGCGa-CGCG- -5' |
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24680 | 5' | -55.1 | NC_005264.1 | + | 156164 | 0.7 | 0.742506 |
Target: 5'- aGgGCGCAUAUgcgcggCUuuGCGGCGUggcgGCGCc -3' miRNA: 3'- -CgCGCGUGUAa-----GAu-CGUCGCGa---CGCG- -5' |
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24680 | 5' | -55.1 | NC_005264.1 | + | 49480 | 0.7 | 0.742506 |
Target: 5'- cGCGC-CGUAUUCgacgGGCAGCaGgUGCGCg -3' miRNA: 3'- -CGCGcGUGUAAGa---UCGUCG-CgACGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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