miRNA display CGI


Results 41 - 60 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24680 5' -55.1 NC_005264.1 + 100181 0.7 0.742506
Target:  5'- gGCGCGCcaacgaGUUCggucGC-GUGCUGCGCu -3'
miRNA:   3'- -CGCGCGug----UAAGau--CGuCGCGACGCG- -5'
24680 5' -55.1 NC_005264.1 + 54339 0.7 0.752265
Target:  5'- aGCGCGCgGCGUUUaUGGCgagccuuagaAGCGUcGCGCg -3'
miRNA:   3'- -CGCGCG-UGUAAG-AUCG----------UCGCGaCGCG- -5'
24680 5' -55.1 NC_005264.1 + 52873 0.7 0.752265
Target:  5'- aCGUGCACAcgCgcgAGCgaGGgGCUGCGUg -3'
miRNA:   3'- cGCGCGUGUaaGa--UCG--UCgCGACGCG- -5'
24680 5' -55.1 NC_005264.1 + 59725 0.7 0.756139
Target:  5'- gGCGCGCAUGgcucguuagaagagUCauggGGCGGCGgCUGCGa -3'
miRNA:   3'- -CGCGCGUGUa-------------AGa---UCGUCGC-GACGCg -5'
24680 5' -55.1 NC_005264.1 + 62612 0.7 0.761916
Target:  5'- gGCGCGgACGUUCcgAGCAacuGCGCccCGCg -3'
miRNA:   3'- -CGCGCgUGUAAGa-UCGU---CGCGacGCG- -5'
24680 5' -55.1 NC_005264.1 + 138307 0.7 0.761916
Target:  5'- cGgGCGCACcgcaggcaaGUUgUGGUcauGGCGCgUGCGCg -3'
miRNA:   3'- -CgCGCGUG---------UAAgAUCG---UCGCG-ACGCG- -5'
24680 5' -55.1 NC_005264.1 + 155741 0.7 0.765744
Target:  5'- gGCGCGUugGaaaccgaaaccucagUUCcccGCAGCGCgacgGCGCc -3'
miRNA:   3'- -CGCGCGugU---------------AAGau-CGUCGCGa---CGCG- -5'
24680 5' -55.1 NC_005264.1 + 777 0.7 0.765744
Target:  5'- aCGCGaCACgGUUCUugcGGUAGCGCuccaguacggcugggUGCGCg -3'
miRNA:   3'- cGCGC-GUG-UAAGA---UCGUCGCG---------------ACGCG- -5'
24680 5' -55.1 NC_005264.1 + 36715 0.7 0.765744
Target:  5'- gGCGCGUugGaaaccgaaaccucagUUCcccGCAGCGCgacgGCGCc -3'
miRNA:   3'- -CGCGCGugU---------------AAGau-CGUCGCGa---CGCG- -5'
24680 5' -55.1 NC_005264.1 + 25715 0.7 0.77145
Target:  5'- gGCGCGgGC-----GGCAGCGgUGCGUa -3'
miRNA:   3'- -CGCGCgUGuaagaUCGUCGCgACGCG- -5'
24680 5' -55.1 NC_005264.1 + 25006 0.7 0.77145
Target:  5'- gGCGCuuuccaccaGCACGUuacugcagaagUCUAGguGCGUagccaUGCGCu -3'
miRNA:   3'- -CGCG---------CGUGUA-----------AGAUCguCGCG-----ACGCG- -5'
24680 5' -55.1 NC_005264.1 + 114754 0.7 0.77145
Target:  5'- aGCGCaGCGCGUUCUu---GCcCUGCGCc -3'
miRNA:   3'- -CGCG-CGUGUAAGAucguCGcGACGCG- -5'
24680 5' -55.1 NC_005264.1 + 98040 0.7 0.780857
Target:  5'- cUGCGCuucCGgugcccaUGGgGGCGCUGCGCg -3'
miRNA:   3'- cGCGCGu--GUaag----AUCgUCGCGACGCG- -5'
24680 5' -55.1 NC_005264.1 + 26474 0.7 0.780857
Target:  5'- -aGCGC-UAUUCgcgccGGCAGCGCccaGCGCc -3'
miRNA:   3'- cgCGCGuGUAAGa----UCGUCGCGa--CGCG- -5'
24680 5' -55.1 NC_005264.1 + 117015 0.69 0.790128
Target:  5'- uGCGCgGCGCAUgacgAGUacAGCGCgaucaGCGCg -3'
miRNA:   3'- -CGCG-CGUGUAaga-UCG--UCGCGa----CGCG- -5'
24680 5' -55.1 NC_005264.1 + 138991 0.69 0.790128
Target:  5'- cUGCGCGCGUUC--GUAGCGUUGUa- -3'
miRNA:   3'- cGCGCGUGUAAGauCGUCGCGACGcg -5'
24680 5' -55.1 NC_005264.1 + 7048 0.69 0.790128
Target:  5'- cUGCGCGCA----AGCGGCGacgGCGCc -3'
miRNA:   3'- cGCGCGUGUaagaUCGUCGCga-CGCG- -5'
24680 5' -55.1 NC_005264.1 + 131716 0.69 0.790128
Target:  5'- uGCGCG-GCGUUgCUGGCgcucuGGCGCuacaaUGCGCu -3'
miRNA:   3'- -CGCGCgUGUAA-GAUCG-----UCGCG-----ACGCG- -5'
24680 5' -55.1 NC_005264.1 + 118197 0.69 0.790128
Target:  5'- -gGCGCACcagUCUAa-GGCGCgGCGCa -3'
miRNA:   3'- cgCGCGUGua-AGAUcgUCGCGaCGCG- -5'
24680 5' -55.1 NC_005264.1 + 126075 0.69 0.790128
Target:  5'- cUGCGCGCA----AGCGGCGacgGCGCc -3'
miRNA:   3'- cGCGCGUGUaagaUCGUCGCga-CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.