miRNA display CGI


Results 21 - 40 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24680 5' -55.1 NC_005264.1 + 146946 0.66 0.930176
Target:  5'- -gGCGCAgAggCUGGaUGGCGCUGaggcCGCa -3'
miRNA:   3'- cgCGCGUgUaaGAUC-GUCGCGAC----GCG- -5'
24680 5' -55.1 NC_005264.1 + 42113 0.66 0.930176
Target:  5'- aCGgGCAC---CUGGCAGgGUgUGCGCu -3'
miRNA:   3'- cGCgCGUGuaaGAUCGUCgCG-ACGCG- -5'
24680 5' -55.1 NC_005264.1 + 83231 0.66 0.929653
Target:  5'- uGCGCGUggGCG-UCUAggccgccGCugauGCGCUGgCGCg -3'
miRNA:   3'- -CGCGCG--UGUaAGAU-------CGu---CGCGAC-GCG- -5'
24680 5' -55.1 NC_005264.1 + 74456 0.66 0.9286
Target:  5'- uCGCGgGCAUgcggCUGGCcgugaauccuAGCcccaugucuacgugGCUGCGCg -3'
miRNA:   3'- cGCGCgUGUAa---GAUCG----------UCG--------------CGACGCG- -5'
24680 5' -55.1 NC_005264.1 + 148873 0.66 0.924836
Target:  5'- aGCGUaCGCAUcUUUGGCGcGCGCUuaucucucGCGCu -3'
miRNA:   3'- -CGCGcGUGUA-AGAUCGU-CGCGA--------CGCG- -5'
24680 5' -55.1 NC_005264.1 + 41729 0.66 0.924836
Target:  5'- uCGCGC-CAggCggcAGCGGCGUaUGUGCu -3'
miRNA:   3'- cGCGCGuGUaaGa--UCGUCGCG-ACGCG- -5'
24680 5' -55.1 NC_005264.1 + 84596 0.66 0.924836
Target:  5'- aGCGCGUugAUaCUcccgcaaggauGCAGCGUUGCu- -3'
miRNA:   3'- -CGCGCGugUAaGAu----------CGUCGCGACGcg -5'
24680 5' -55.1 NC_005264.1 + 53568 0.66 0.924836
Target:  5'- uUGuCGCGCAg---AGCGGCGCggcuUGCGUu -3'
miRNA:   3'- cGC-GCGUGUaagaUCGUCGCG----ACGCG- -5'
24680 5' -55.1 NC_005264.1 + 117905 0.66 0.924836
Target:  5'- cGCGCGCaACGggCccGCGGUucGCUuGCGCc -3'
miRNA:   3'- -CGCGCG-UGUaaGauCGUCG--CGA-CGCG- -5'
24680 5' -55.1 NC_005264.1 + 52955 0.66 0.924836
Target:  5'- aUGCaGCGCc-UCUacgcGGCGGUGCUGCGa -3'
miRNA:   3'- cGCG-CGUGuaAGA----UCGUCGCGACGCg -5'
24680 5' -55.1 NC_005264.1 + 100007 0.66 0.924836
Target:  5'- aCGCGaCGCGgaaaUaaagaaggccgcGGCGGCGCUGCuGCg -3'
miRNA:   3'- cGCGC-GUGUaag-A------------UCGUCGCGACG-CG- -5'
24680 5' -55.1 NC_005264.1 + 28320 0.66 0.924288
Target:  5'- cGCGCGCcuACG-UCUAGuCGGUaucggcacgacuuGCcUGCGCg -3'
miRNA:   3'- -CGCGCG--UGUaAGAUC-GUCG-------------CG-ACGCG- -5'
24680 5' -55.1 NC_005264.1 + 109374 0.66 0.919252
Target:  5'- aUGUGCGCGUUgcgcCUAGUcaagucGGCGUUGgCGCu -3'
miRNA:   3'- cGCGCGUGUAA----GAUCG------UCGCGAC-GCG- -5'
24680 5' -55.1 NC_005264.1 + 45744 0.66 0.919252
Target:  5'- cGCGCGguCGUgccguaUCUAGCacacagacAGCGauggGCGCc -3'
miRNA:   3'- -CGCGCguGUA------AGAUCG--------UCGCga--CGCG- -5'
24680 5' -55.1 NC_005264.1 + 162826 0.66 0.919252
Target:  5'- gGgGCGCAguUUCUGucGCgauauAGCGUgGCGCg -3'
miRNA:   3'- -CgCGCGUguAAGAU--CG-----UCGCGaCGCG- -5'
24680 5' -55.1 NC_005264.1 + 73366 0.66 0.919252
Target:  5'- aGCGCGCcuuucuuugucuGCGgcgaaaUGGUAGCGCgGCGg -3'
miRNA:   3'- -CGCGCG------------UGUaag---AUCGUCGCGaCGCg -5'
24680 5' -55.1 NC_005264.1 + 91983 0.66 0.919252
Target:  5'- cGCGCGCACGUauaUAGCccaAGCGCg---- -3'
miRNA:   3'- -CGCGCGUGUAag-AUCG---UCGCGacgcg -5'
24680 5' -55.1 NC_005264.1 + 56906 0.66 0.919252
Target:  5'- uGgGCGaGCAUUauggGGCGGCGUacgUGCGUg -3'
miRNA:   3'- -CgCGCgUGUAAga--UCGUCGCG---ACGCG- -5'
24680 5' -55.1 NC_005264.1 + 43800 0.66 0.919252
Target:  5'- gGgGCGCAguUUCUGucGCgauauAGCGUgGCGCg -3'
miRNA:   3'- -CgCGCGUguAAGAU--CG-----UCGCGaCGCG- -5'
24680 5' -55.1 NC_005264.1 + 15927 0.66 0.919252
Target:  5'- gGUGUGCGCGUg--AGUuucgAGCGUcgguuUGCGCg -3'
miRNA:   3'- -CGCGCGUGUAagaUCG----UCGCG-----ACGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.