miRNA display CGI


Results 41 - 60 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24680 5' -55.1 NC_005264.1 + 31672 0.66 0.919252
Target:  5'- uGCGCGagGCAgggcUCUcGGCGGgGCUGCccGCc -3'
miRNA:   3'- -CGCGCg-UGUa---AGA-UCGUCgCGACG--CG- -5'
24680 5' -55.1 NC_005264.1 + 73366 0.66 0.919252
Target:  5'- aGCGCGCcuuucuuugucuGCGgcgaaaUGGUAGCGCgGCGg -3'
miRNA:   3'- -CGCGCG------------UGUaag---AUCGUCGCGaCGCg -5'
24680 5' -55.1 NC_005264.1 + 15927 0.66 0.919252
Target:  5'- gGUGUGCGCGUg--AGUuucgAGCGUcgguuUGCGCg -3'
miRNA:   3'- -CGCGCGUGUAagaUCG----UCGCG-----ACGCG- -5'
24680 5' -55.1 NC_005264.1 + 113379 0.66 0.919252
Target:  5'- gGCGCGgGuCAgggUUAuGCAGgcgaGCUGCGCg -3'
miRNA:   3'- -CGCGCgU-GUaa-GAU-CGUCg---CGACGCG- -5'
24680 5' -55.1 NC_005264.1 + 45744 0.66 0.919252
Target:  5'- cGCGCGguCGUgccguaUCUAGCacacagacAGCGauggGCGCc -3'
miRNA:   3'- -CGCGCguGUA------AGAUCG--------UCGCga--CGCG- -5'
24680 5' -55.1 NC_005264.1 + 81082 0.66 0.91868
Target:  5'- uGCGCGCACGUcucgugcuUCUugccgccagaaucGGUAcGCGUgGCGUg -3'
miRNA:   3'- -CGCGCGUGUA--------AGA-------------UCGU-CGCGaCGCG- -5'
24680 5' -55.1 NC_005264.1 + 131576 0.66 0.91868
Target:  5'- uGCGCgGCACcuggcgccuagguGUggagggAGCGGCGCgcguggGCGCg -3'
miRNA:   3'- -CGCG-CGUG-------------UAaga---UCGUCGCGa-----CGCG- -5'
24680 5' -55.1 NC_005264.1 + 33182 0.66 0.915785
Target:  5'- uGCGUGCgaacgcagagcuauuACGcuuaaggCUGGCGGCGCUcgGCGUc -3'
miRNA:   3'- -CGCGCG---------------UGUaa-----GAUCGUCGCGA--CGCG- -5'
24680 5' -55.1 NC_005264.1 + 47624 0.66 0.913425
Target:  5'- gGCGCGUACAUauguUCUGGCGG-GCaagagGaGCa -3'
miRNA:   3'- -CGCGCGUGUA----AGAUCGUCgCGa----CgCG- -5'
24680 5' -55.1 NC_005264.1 + 134789 0.66 0.913425
Target:  5'- cCGCGCGC-UUUUAccCGGCGUcGCGCg -3'
miRNA:   3'- cGCGCGUGuAAGAUc-GUCGCGaCGCG- -5'
24680 5' -55.1 NC_005264.1 + 56818 0.66 0.913425
Target:  5'- uGCGCuGCGCGgcggcccuagCUAGCGGCucgugGCUGC-Ca -3'
miRNA:   3'- -CGCG-CGUGUaa--------GAUCGUCG-----CGACGcG- -5'
24680 5' -55.1 NC_005264.1 + 48081 0.66 0.913425
Target:  5'- aGCgGCGCAgGgaCaAGaacGCGCUGCGCu -3'
miRNA:   3'- -CG-CGCGUgUaaGaUCgu-CGCGACGCG- -5'
24680 5' -55.1 NC_005264.1 + 36393 0.66 0.913425
Target:  5'- cGCGCuagGCGCcaUCUAGCuGaCGUgagGCGCc -3'
miRNA:   3'- -CGCG---CGUGuaAGAUCGuC-GCGa--CGCG- -5'
24680 5' -55.1 NC_005264.1 + 114744 0.66 0.913425
Target:  5'- cGCGCGUGCAgaaccCgcGCGGCcGCgguauUGCGCu -3'
miRNA:   3'- -CGCGCGUGUaa---GauCGUCG-CG-----ACGCG- -5'
24680 5' -55.1 NC_005264.1 + 135135 0.66 0.913425
Target:  5'- aGUGUGCGCAUUgagAGCgAGCGUcgGCGa -3'
miRNA:   3'- -CGCGCGUGUAAga-UCG-UCGCGa-CGCg -5'
24680 5' -55.1 NC_005264.1 + 62990 0.66 0.913425
Target:  5'- -gGCGCACG-UC-AGUAGCGCuucUGcCGCc -3'
miRNA:   3'- cgCGCGUGUaAGaUCGUCGCG---AC-GCG- -5'
24680 5' -55.1 NC_005264.1 + 120975 0.66 0.913425
Target:  5'- -aGCGCGCGgagCUGGaaaAGUuaCUGCGCg -3'
miRNA:   3'- cgCGCGUGUaa-GAUCg--UCGc-GACGCG- -5'
24680 5' -55.1 NC_005264.1 + 111438 0.67 0.909813
Target:  5'- uGCGCGUucugcuaucguuagaGCuuaagUCUGGCaagcccuucacAGaCGCUGCGCc -3'
miRNA:   3'- -CGCGCG---------------UGua---AGAUCG-----------UC-GCGACGCG- -5'
24680 5' -55.1 NC_005264.1 + 45525 0.67 0.909813
Target:  5'- cCGCGCACGcUUCUcagucgcacgcggagAGCGGCaucGCGCa -3'
miRNA:   3'- cGCGCGUGU-AAGA---------------UCGUCGcgaCGCG- -5'
24680 5' -55.1 NC_005264.1 + 107866 0.67 0.909202
Target:  5'- cCGCGguagaaaCACAUaaacaucauggcagCUAGCGGCGCgGUGCg -3'
miRNA:   3'- cGCGC-------GUGUAa-------------GAUCGUCGCGaCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.