miRNA display CGI


Results 61 - 80 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24680 5' -55.1 NC_005264.1 + 123244 0.67 0.907357
Target:  5'- aGCGCGCAgcuCcgUCUGGCGGgGgcagcauacucuCUGgGCc -3'
miRNA:   3'- -CGCGCGU---GuaAGAUCGUCgC------------GACgCG- -5'
24680 5' -55.1 NC_005264.1 + 77023 0.67 0.907357
Target:  5'- aGCGCGCGC-UUCUuggucacAGaCAGCGacgacccggaagagGCGCg -3'
miRNA:   3'- -CGCGCGUGuAAGA-------UC-GUCGCga------------CGCG- -5'
24680 5' -55.1 NC_005264.1 + 107215 0.67 0.907357
Target:  5'- gGCGCGCGCGgu-UGGCauucGGCGCcagcCGCg -3'
miRNA:   3'- -CGCGCGUGUaagAUCG----UCGCGac--GCG- -5'
24680 5' -55.1 NC_005264.1 + 116889 0.67 0.907357
Target:  5'- uCGCGCGCuguuuuacCUAG-AGCGCUGUucGCg -3'
miRNA:   3'- cGCGCGUGuaa-----GAUCgUCGCGACG--CG- -5'
24680 5' -55.1 NC_005264.1 + 146774 0.67 0.907357
Target:  5'- aGCGcCGCGCggcgGUUCUcgguGCGGCGgUGUGg -3'
miRNA:   3'- -CGC-GCGUG----UAAGAu---CGUCGCgACGCg -5'
24680 5' -55.1 NC_005264.1 + 40767 0.67 0.906114
Target:  5'- aGCGUGC-CAguuaggagacgC-AGCGGCGCUGCa- -3'
miRNA:   3'- -CGCGCGuGUaa---------GaUCGUCGCGACGcg -5'
24680 5' -55.1 NC_005264.1 + 159793 0.67 0.906114
Target:  5'- aGCGUGC-CAguuaggagacgC-AGCGGCGCUGCa- -3'
miRNA:   3'- -CGCGCGuGUaa---------GaUCGUCGCGACGcg -5'
24680 5' -55.1 NC_005264.1 + 150698 0.67 0.901049
Target:  5'- cGCGCGagGCAgggcUCUcGGCGGgGCUGCccGCc -3'
miRNA:   3'- -CGCGCg-UGUa---AGA-UCGUCgCGACG--CG- -5'
24680 5' -55.1 NC_005264.1 + 25529 0.67 0.901049
Target:  5'- -aGCGCcCAUaa-GGCGGCGCggacaagGCGCu -3'
miRNA:   3'- cgCGCGuGUAagaUCGUCGCGa------CGCG- -5'
24680 5' -55.1 NC_005264.1 + 158502 0.67 0.901049
Target:  5'- cGCGCGCuCAgcCgccaggGGCAG-GCcUGCGCu -3'
miRNA:   3'- -CGCGCGuGUaaGa-----UCGUCgCG-ACGCG- -5'
24680 5' -55.1 NC_005264.1 + 5982 0.67 0.901049
Target:  5'- aUGCcaGUACAU--UAGCAGCGCggcggucgcugUGCGCa -3'
miRNA:   3'- cGCG--CGUGUAagAUCGUCGCG-----------ACGCG- -5'
24680 5' -55.1 NC_005264.1 + 125263 0.67 0.901049
Target:  5'- gGCGCGaCuuGUUCUucgcccuccgcGGCGGCGCgcUGuCGCu -3'
miRNA:   3'- -CGCGC-GugUAAGA-----------UCGUCGCG--AC-GCG- -5'
24680 5' -55.1 NC_005264.1 + 136463 0.67 0.901049
Target:  5'- cCGCGCuCAg---AGaCGGCGCcGCGCa -3'
miRNA:   3'- cGCGCGuGUaagaUC-GUCGCGaCGCG- -5'
24680 5' -55.1 NC_005264.1 + 136358 0.67 0.901049
Target:  5'- cGgGCGCugGgcgCUGcCGGCGCgaauaGCGCu -3'
miRNA:   3'- -CgCGCGugUaa-GAUcGUCGCGa----CGCG- -5'
24680 5' -55.1 NC_005264.1 + 39475 0.67 0.901049
Target:  5'- cGCGCGCuCAgcCgccaggGGCAG-GCcUGCGCu -3'
miRNA:   3'- -CGCGCGuGUaaGa-----UCGUCgCG-ACGCG- -5'
24680 5' -55.1 NC_005264.1 + 84166 0.67 0.89911
Target:  5'- aGCGCGCGCGccggaccuguuuacUUCU-GCGGCguacaGCUGgaGCg -3'
miRNA:   3'- -CGCGCGUGU--------------AAGAuCGUCG-----CGACg-CG- -5'
24680 5' -55.1 NC_005264.1 + 58356 0.67 0.894504
Target:  5'- cUGuCGUAC--UCUGGCGGgGCcgGCGCg -3'
miRNA:   3'- cGC-GCGUGuaAGAUCGUCgCGa-CGCG- -5'
24680 5' -55.1 NC_005264.1 + 133572 0.67 0.894504
Target:  5'- cCGCGCACAguccaacaaUCUGcgcgccGCAGUcuccGCUGUGCu -3'
miRNA:   3'- cGCGCGUGUa--------AGAU------CGUCG----CGACGCG- -5'
24680 5' -55.1 NC_005264.1 + 61812 0.67 0.894504
Target:  5'- cCGCGgGCA-UCgccgGGCAGUGCcuggcucgccUGCGCc -3'
miRNA:   3'- cGCGCgUGUaAGa---UCGUCGCG----------ACGCG- -5'
24680 5' -55.1 NC_005264.1 + 128558 0.67 0.894504
Target:  5'- --aCGUAUAUUUccGCGGCGgaGCGCa -3'
miRNA:   3'- cgcGCGUGUAAGauCGUCGCgaCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.