miRNA display CGI


Results 1 - 20 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24680 5' -55.1 NC_005264.1 + 267 0.69 0.829082
Target:  5'- cGCG-GCAgaagcccacuuagauCAUUCUGGCgaagAGCGCUGgGUa -3'
miRNA:   3'- -CGCgCGU---------------GUAAGAUCG----UCGCGACgCG- -5'
24680 5' -55.1 NC_005264.1 + 777 0.7 0.765744
Target:  5'- aCGCGaCACgGUUCUugcGGUAGCGCuccaguacggcugggUGCGCg -3'
miRNA:   3'- cGCGC-GUG-UAAGA---UCGUCGCG---------------ACGCG- -5'
24680 5' -55.1 NC_005264.1 + 4768 0.74 0.558891
Target:  5'- aUGUGCGCcUUCUGcGCGGCGCcguucGCGCa -3'
miRNA:   3'- cGCGCGUGuAAGAU-CGUCGCGa----CGCG- -5'
24680 5' -55.1 NC_005264.1 + 5982 0.67 0.901049
Target:  5'- aUGCcaGUACAU--UAGCAGCGCggcggucgcugUGCGCa -3'
miRNA:   3'- cGCG--CGUGUAagAUCGUCGCG-----------ACGCG- -5'
24680 5' -55.1 NC_005264.1 + 6517 0.72 0.641062
Target:  5'- aGCGaagcaGCGCGUUU--GCAGCGCcGCGUa -3'
miRNA:   3'- -CGCg----CGUGUAAGauCGUCGCGaCGCG- -5'
24680 5' -55.1 NC_005264.1 + 7048 0.69 0.790128
Target:  5'- cUGCGCGCA----AGCGGCGacgGCGCc -3'
miRNA:   3'- cGCGCGUGUaagaUCGUCGCga-CGCG- -5'
24680 5' -55.1 NC_005264.1 + 7894 0.68 0.861455
Target:  5'- cGCGCGUACGacgucccccacgcucUggCUAGCAaCGC-GCGCg -3'
miRNA:   3'- -CGCGCGUGU---------------Aa-GAUCGUcGCGaCGCG- -5'
24680 5' -55.1 NC_005264.1 + 8244 0.68 0.858362
Target:  5'- aGCGCGguUAgUCUGGcCAGCG--GCGCc -3'
miRNA:   3'- -CGCGCguGUaAGAUC-GUCGCgaCGCG- -5'
24680 5' -55.1 NC_005264.1 + 9883 0.66 0.938215
Target:  5'- gGCGCGcCACGgccuucccagccCUGGCGGCagaaagGCgGCGCu -3'
miRNA:   3'- -CGCGC-GUGUaa----------GAUCGUCG------CGaCGCG- -5'
24680 5' -55.1 NC_005264.1 + 12015 0.69 0.799255
Target:  5'- cGUGauCGCAguUUUcaggGGCAGuCGCUGCGCu -3'
miRNA:   3'- -CGC--GCGUguAAGa---UCGUC-GCGACGCG- -5'
24680 5' -55.1 NC_005264.1 + 15927 0.66 0.919252
Target:  5'- gGUGUGCGCGUg--AGUuucgAGCGUcgguuUGCGCg -3'
miRNA:   3'- -CGCGCGUGUAagaUCG----UCGCG-----ACGCG- -5'
24680 5' -55.1 NC_005264.1 + 16511 0.74 0.548781
Target:  5'- gGCGCGCACGccgagagUCaggaUAGCucuuAGCGCuUGCGCg -3'
miRNA:   3'- -CGCGCGUGUa------AG----AUCG----UCGCG-ACGCG- -5'
24680 5' -55.1 NC_005264.1 + 18277 0.69 0.823103
Target:  5'- gGC-CGUACAgcgCUAGCGGgagaucuccgucguCGUUGCGCg -3'
miRNA:   3'- -CGcGCGUGUaa-GAUCGUC--------------GCGACGCG- -5'
24680 5' -55.1 NC_005264.1 + 19831 0.66 0.937244
Target:  5'- cGCGUcCACAUaaacgggCUAGUAGUGUaacaguccuccagcuUGCGCg -3'
miRNA:   3'- -CGCGcGUGUAa------GAUCGUCGCG---------------ACGCG- -5'
24680 5' -55.1 NC_005264.1 + 20467 0.68 0.856021
Target:  5'- aGCgGCGCGCAUgggagggcauggaaUCccuuuugccuGCGGuCGCUGCGCc -3'
miRNA:   3'- -CG-CGCGUGUA--------------AGau--------CGUC-GCGACGCG- -5'
24680 5' -55.1 NC_005264.1 + 20843 0.68 0.834136
Target:  5'- cCGCG-GCAUaCga-CGGCGCUGCGCg -3'
miRNA:   3'- cGCGCgUGUAaGaucGUCGCGACGCG- -5'
24680 5' -55.1 NC_005264.1 + 22722 0.69 0.799255
Target:  5'- gGCGCGCaaGCGUgugUCUGcuGCccGGUGCUGgGCg -3'
miRNA:   3'- -CGCGCG--UGUA---AGAU--CG--UCGCGACgCG- -5'
24680 5' -55.1 NC_005264.1 + 23282 0.75 0.470433
Target:  5'- cGCGCGCGCGU----GCAGCGa-GCGCa -3'
miRNA:   3'- -CGCGCGUGUAagauCGUCGCgaCGCG- -5'
24680 5' -55.1 NC_005264.1 + 25006 0.7 0.77145
Target:  5'- gGCGCuuuccaccaGCACGUuacugcagaagUCUAGguGCGUagccaUGCGCu -3'
miRNA:   3'- -CGCG---------CGUGUA-----------AGAUCguCGCG-----ACGCG- -5'
24680 5' -55.1 NC_005264.1 + 25529 0.67 0.901049
Target:  5'- -aGCGCcCAUaa-GGCGGCGCggacaagGCGCu -3'
miRNA:   3'- cgCGCGuGUAagaUCGUCGCGa------CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.