miRNA display CGI


Results 21 - 40 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24680 5' -55.1 NC_005264.1 + 25715 0.7 0.77145
Target:  5'- gGCGCGgGC-----GGCAGCGgUGCGUa -3'
miRNA:   3'- -CGCGCgUGuaagaUCGUCGCgACGCG- -5'
24680 5' -55.1 NC_005264.1 + 25891 0.67 0.880717
Target:  5'- --cCGCACAgu---GgGGCGCUGCGCc -3'
miRNA:   3'- cgcGCGUGUaagauCgUCGCGACGCG- -5'
24680 5' -55.1 NC_005264.1 + 26360 0.68 0.850486
Target:  5'- uGUGCGCcgcgGCAggCUGcGCGGCGCcgucucugaGCGCg -3'
miRNA:   3'- -CGCGCG----UGUaaGAU-CGUCGCGa--------CGCG- -5'
24680 5' -55.1 NC_005264.1 + 26474 0.7 0.780857
Target:  5'- -aGCGC-UAUUCgcgccGGCAGCGCccaGCGCc -3'
miRNA:   3'- cgCGCGuGUAAGa----UCGUCGCGa--CGCG- -5'
24680 5' -55.1 NC_005264.1 + 26951 0.66 0.935273
Target:  5'- cGCGUGCGCAUc---GCAGUgGCUugGCGUa -3'
miRNA:   3'- -CGCGCGUGUAagauCGUCG-CGA--CGCG- -5'
24680 5' -55.1 NC_005264.1 + 28320 0.66 0.924288
Target:  5'- cGCGCGCcuACG-UCUAGuCGGUaucggcacgacuuGCcUGCGCg -3'
miRNA:   3'- -CGCGCG--UGUaAGAUC-GUCG-------------CG-ACGCG- -5'
24680 5' -55.1 NC_005264.1 + 28706 0.68 0.873484
Target:  5'- cGCGCGguUAUgucuuauggggcUCUAGUuGC-CUGCGCc -3'
miRNA:   3'- -CGCGCguGUA------------AGAUCGuCGcGACGCG- -5'
24680 5' -55.1 NC_005264.1 + 29265 0.7 0.732648
Target:  5'- gGCGCGCAgAUUgUUGGacuguGCGCggGCGCg -3'
miRNA:   3'- -CGCGCGUgUAA-GAUCgu---CGCGa-CGCG- -5'
24680 5' -55.1 NC_005264.1 + 30382 0.68 0.850486
Target:  5'- cCGCGuCGCGUcUCggcGGCGGCGgUcGCGCg -3'
miRNA:   3'- cGCGC-GUGUA-AGa--UCGUCGCgA-CGCG- -5'
24680 5' -55.1 NC_005264.1 + 31672 0.66 0.919252
Target:  5'- uGCGCGagGCAgggcUCUcGGCGGgGCUGCccGCc -3'
miRNA:   3'- -CGCGCg-UGUa---AGA-UCGUCgCGACG--CG- -5'
24680 5' -55.1 NC_005264.1 + 33182 0.66 0.915785
Target:  5'- uGCGUGCgaacgcagagcuauuACGcuuaaggCUGGCGGCGCUcgGCGUc -3'
miRNA:   3'- -CGCGCG---------------UGUaa-----GAUCGUCGCGA--CGCG- -5'
24680 5' -55.1 NC_005264.1 + 33484 0.66 0.930176
Target:  5'- cCGCGCACucguguaUUGGCuauuCGUUGCGCg -3'
miRNA:   3'- cGCGCGUGuaa----GAUCGuc--GCGACGCG- -5'
24680 5' -55.1 NC_005264.1 + 33695 0.71 0.722703
Target:  5'- aCGCGCAuCGcUCcgAGCcGCGuCUGCGCg -3'
miRNA:   3'- cGCGCGU-GUaAGa-UCGuCGC-GACGCG- -5'
24680 5' -55.1 NC_005264.1 + 34098 0.73 0.593615
Target:  5'- gGCGgGCACAauggCUcAGCGGCGCgaaacagcgucgagGCGCg -3'
miRNA:   3'- -CGCgCGUGUaa--GA-UCGUCGCGa-------------CGCG- -5'
24680 5' -55.1 NC_005264.1 + 34259 0.72 0.66169
Target:  5'- cGUGCGCGCGguaaUCc-GC-GUGCUGCGCu -3'
miRNA:   3'- -CGCGCGUGUa---AGauCGuCGCGACGCG- -5'
24680 5' -55.1 NC_005264.1 + 36393 0.66 0.913425
Target:  5'- cGCGCuagGCGCcaUCUAGCuGaCGUgagGCGCc -3'
miRNA:   3'- -CGCG---CGUGuaAGAUCGuC-GCGa--CGCG- -5'
24680 5' -55.1 NC_005264.1 + 36715 0.7 0.765744
Target:  5'- gGCGCGUugGaaaccgaaaccucagUUCcccGCAGCGCgacgGCGCc -3'
miRNA:   3'- -CGCGCGugU---------------AAGau-CGUCGCGa---CGCG- -5'
24680 5' -55.1 NC_005264.1 + 39475 0.67 0.901049
Target:  5'- cGCGCGCuCAgcCgccaggGGCAG-GCcUGCGCu -3'
miRNA:   3'- -CGCGCGuGUaaGa-----UCGUCgCG-ACGCG- -5'
24680 5' -55.1 NC_005264.1 + 39613 0.68 0.842408
Target:  5'- uGCGCGCuuGCuc-CUAGacaCGGCGCUGUGg -3'
miRNA:   3'- -CGCGCG--UGuaaGAUC---GUCGCGACGCg -5'
24680 5' -55.1 NC_005264.1 + 40257 0.69 0.808228
Target:  5'- cGUGCgGUACcccaacgCgguGCGGCGCUGCGUg -3'
miRNA:   3'- -CGCG-CGUGuaa----Gau-CGUCGCGACGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.