miRNA display CGI


Results 41 - 60 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24680 5' -55.1 NC_005264.1 + 40373 0.71 0.702582
Target:  5'- cGUG-GCGC-UUUgcgAGCAGCGCggGCGCg -3'
miRNA:   3'- -CGCgCGUGuAAGa--UCGUCGCGa-CGCG- -5'
24680 5' -55.1 NC_005264.1 + 40767 0.67 0.906114
Target:  5'- aGCGUGC-CAguuaggagacgC-AGCGGCGCUGCa- -3'
miRNA:   3'- -CGCGCGuGUaa---------GaUCGUCGCGACGcg -5'
24680 5' -55.1 NC_005264.1 + 41729 0.66 0.924836
Target:  5'- uCGCGC-CAggCggcAGCGGCGUaUGUGCu -3'
miRNA:   3'- cGCGCGuGUaaGa--UCGUCGCG-ACGCG- -5'
24680 5' -55.1 NC_005264.1 + 42113 0.66 0.930176
Target:  5'- aCGgGCAC---CUGGCAGgGUgUGCGCu -3'
miRNA:   3'- cGCgCGUGuaaGAUCGUCgCG-ACGCG- -5'
24680 5' -55.1 NC_005264.1 + 42654 0.69 0.799255
Target:  5'- cGCGCGCcgGCAgaCUGGCGGCcggaucGUcccgUGCGCc -3'
miRNA:   3'- -CGCGCG--UGUaaGAUCGUCG------CG----ACGCG- -5'
24680 5' -55.1 NC_005264.1 + 43656 0.72 0.671971
Target:  5'- -gGUGUACggUC-GGC-GCGCUGCGCg -3'
miRNA:   3'- cgCGCGUGuaAGaUCGuCGCGACGCG- -5'
24680 5' -55.1 NC_005264.1 + 43800 0.66 0.919252
Target:  5'- gGgGCGCAguUUCUGucGCgauauAGCGUgGCGCg -3'
miRNA:   3'- -CgCGCGUguAAGAU--CG-----UCGCGaCGCG- -5'
24680 5' -55.1 NC_005264.1 + 45393 0.69 0.809116
Target:  5'- gGCGCgGCAaacgauggagGGCGGCGCccUGCGCg -3'
miRNA:   3'- -CGCG-CGUguaaga----UCGUCGCG--ACGCG- -5'
24680 5' -55.1 NC_005264.1 + 45525 0.67 0.909813
Target:  5'- cCGCGCACGcUUCUcagucgcacgcggagAGCGGCaucGCGCa -3'
miRNA:   3'- cGCGCGUGU-AAGA---------------UCGUCGcgaCGCG- -5'
24680 5' -55.1 NC_005264.1 + 45744 0.66 0.919252
Target:  5'- cGCGCGguCGUgccguaUCUAGCacacagacAGCGauggGCGCc -3'
miRNA:   3'- -CGCGCguGUA------AGAUCG--------UCGCga--CGCG- -5'
24680 5' -55.1 NC_005264.1 + 46892 0.72 0.671971
Target:  5'- cCGCGUACcucCUAGCuGCGCcGCGUg -3'
miRNA:   3'- cGCGCGUGuaaGAUCGuCGCGaCGCG- -5'
24680 5' -55.1 NC_005264.1 + 47624 0.66 0.913425
Target:  5'- gGCGCGUACAUauguUCUGGCGG-GCaagagGaGCa -3'
miRNA:   3'- -CGCGCGUGUA----AGAUCGUCgCGa----CgCG- -5'
24680 5' -55.1 NC_005264.1 + 48081 0.66 0.913425
Target:  5'- aGCgGCGCAgGgaCaAGaacGCGCUGCGCu -3'
miRNA:   3'- -CG-CGCGUgUaaGaUCgu-CGCGACGCG- -5'
24680 5' -55.1 NC_005264.1 + 48099 0.69 0.799255
Target:  5'- cCGCGCGgGUUCU-GCA-CGC-GCGCg -3'
miRNA:   3'- cGCGCGUgUAAGAuCGUcGCGaCGCG- -5'
24680 5' -55.1 NC_005264.1 + 48349 0.73 0.579261
Target:  5'- -gGCGCACGccaUGGCGGCcucGUUGCGCa -3'
miRNA:   3'- cgCGCGUGUaagAUCGUCG---CGACGCG- -5'
24680 5' -55.1 NC_005264.1 + 49443 0.66 0.935273
Target:  5'- aGCGCaGCGCug-CUAGaauGUGC-GCGCu -3'
miRNA:   3'- -CGCG-CGUGuaaGAUCgu-CGCGaCGCG- -5'
24680 5' -55.1 NC_005264.1 + 49480 0.7 0.742506
Target:  5'- cGCGC-CGUAUUCgacgGGCAGCaGgUGCGCg -3'
miRNA:   3'- -CGCGcGUGUAAGa---UCGUCG-CgACGCG- -5'
24680 5' -55.1 NC_005264.1 + 49841 0.69 0.799255
Target:  5'- uGCGCgaGCACGUacgccgcagccuUCUGGCGGaGCUGCu- -3'
miRNA:   3'- -CGCG--CGUGUA------------AGAUCGUCgCGACGcg -5'
24680 5' -55.1 NC_005264.1 + 50565 0.76 0.424449
Target:  5'- gGCGCGCGCGUgcgggaagCgcacGCGGCGCUGaGCa -3'
miRNA:   3'- -CGCGCGUGUAa-------Gau--CGUCGCGACgCG- -5'
24680 5' -55.1 NC_005264.1 + 52839 0.68 0.858362
Target:  5'- --aUGCACAgugCUAcGCGGgaGCUGCGCg -3'
miRNA:   3'- cgcGCGUGUaa-GAU-CGUCg-CGACGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.