miRNA display CGI


Results 1 - 20 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24680 5' -55.1 NC_005264.1 + 162826 0.66 0.919252
Target:  5'- gGgGCGCAguUUCUGucGCgauauAGCGUgGCGCg -3'
miRNA:   3'- -CgCGCGUguAAGAU--CG-----UCGCGaCGCG- -5'
24680 5' -55.1 NC_005264.1 + 162682 0.72 0.671971
Target:  5'- -gGUGUACggUC-GGC-GCGCUGCGCg -3'
miRNA:   3'- cgCGCGUGuaAGaUCGuCGCGACGCG- -5'
24680 5' -55.1 NC_005264.1 + 161680 0.69 0.799255
Target:  5'- cGCGCGCcgGCAgaCUGGCGGCcggaucGUcccgUGCGCc -3'
miRNA:   3'- -CGCGCG--UGUaaGAUCGUCG------CG----ACGCG- -5'
24680 5' -55.1 NC_005264.1 + 161140 0.66 0.930176
Target:  5'- aCGgGCAC---CUGGCAGgGUgUGCGCu -3'
miRNA:   3'- cGCgCGUGuaaGAUCGUCgCG-ACGCG- -5'
24680 5' -55.1 NC_005264.1 + 160115 0.68 0.842408
Target:  5'- aGUGaCGCGCcugggGGCAGUGCUGCa- -3'
miRNA:   3'- -CGC-GCGUGuaagaUCGUCGCGACGcg -5'
24680 5' -55.1 NC_005264.1 + 159793 0.67 0.906114
Target:  5'- aGCGUGC-CAguuaggagacgC-AGCGGCGCUGCa- -3'
miRNA:   3'- -CGCGCGuGUaa---------GaUCGUCGCGACGcg -5'
24680 5' -55.1 NC_005264.1 + 159400 0.71 0.702582
Target:  5'- cGUG-GCGC-UUUgcgAGCAGCGCggGCGCg -3'
miRNA:   3'- -CGCgCGUGuAAGa--UCGUCGCGa-CGCG- -5'
24680 5' -55.1 NC_005264.1 + 158502 0.67 0.901049
Target:  5'- cGCGCGCuCAgcCgccaggGGCAG-GCcUGCGCu -3'
miRNA:   3'- -CGCGCGuGUaaGa-----UCGUCgCG-ACGCG- -5'
24680 5' -55.1 NC_005264.1 + 156842 0.69 0.817038
Target:  5'- gGUGCGCACAgcgaccGCcGCGCUGCu- -3'
miRNA:   3'- -CGCGCGUGUaagau-CGuCGCGACGcg -5'
24680 5' -55.1 NC_005264.1 + 156164 0.7 0.742506
Target:  5'- aGgGCGCAUAUgcgcggCUuuGCGGCGUggcgGCGCc -3'
miRNA:   3'- -CgCGCGUGUAa-----GAu-CGUCGCGa---CGCG- -5'
24680 5' -55.1 NC_005264.1 + 156032 0.67 0.890464
Target:  5'- uUGCGCGguggacgccuCAUggcugCUAGauucgguagccaugcCGGCGCUGCGCg -3'
miRNA:   3'- cGCGCGU----------GUAa----GAUC---------------GUCGCGACGCG- -5'
24680 5' -55.1 NC_005264.1 + 155947 0.66 0.930176
Target:  5'- cGCGCGCugGgaCUGcGCGGCucGCgGaCGCu -3'
miRNA:   3'- -CGCGCGugUaaGAU-CGUCG--CGaC-GCG- -5'
24680 5' -55.1 NC_005264.1 + 155741 0.7 0.765744
Target:  5'- gGCGCGUugGaaaccgaaaccucagUUCcccGCAGCGCgacgGCGCc -3'
miRNA:   3'- -CGCGCGugU---------------AAGau-CGUCGCGa---CGCG- -5'
24680 5' -55.1 NC_005264.1 + 154927 0.72 0.624536
Target:  5'- aCGCGCGCGUUgCUAGCcagAGCGUgggggacgucguacGCGCg -3'
miRNA:   3'- cGCGCGUGUAA-GAUCG---UCGCGa-------------CGCG- -5'
24680 5' -55.1 NC_005264.1 + 153615 0.68 0.842408
Target:  5'- --aCGCGCGUggUAGCGGCGUUuCGCa -3'
miRNA:   3'- cgcGCGUGUAagAUCGUCGCGAcGCG- -5'
24680 5' -55.1 NC_005264.1 + 153125 0.73 0.593615
Target:  5'- gGCGgGCACAauggCUcAGCGGCGCgaaacagcgucgagGCGCg -3'
miRNA:   3'- -CGCgCGUGUaa--GA-UCGUCGCGa-------------CGCG- -5'
24680 5' -55.1 NC_005264.1 + 150698 0.67 0.901049
Target:  5'- cGCGCGagGCAgggcUCUcGGCGGgGCUGCccGCc -3'
miRNA:   3'- -CGCGCg-UGUa---AGA-UCGUCgCGACG--CG- -5'
24680 5' -55.1 NC_005264.1 + 149409 0.68 0.850486
Target:  5'- cCGCGuCGCGUcUCggcGGCGGCGgUcGCGCg -3'
miRNA:   3'- cGCGC-GUGUA-AGa--UCGUCGCgA-CGCG- -5'
24680 5' -55.1 NC_005264.1 + 148873 0.66 0.924836
Target:  5'- aGCGUaCGCAUcUUUGGCGcGCGCUuaucucucGCGCu -3'
miRNA:   3'- -CGCGcGUGUA-AGAUCGU-CGCGA--------CGCG- -5'
24680 5' -55.1 NC_005264.1 + 148497 0.71 0.702582
Target:  5'- aCGCGCugGUcgcgUUGGCGGCGa-GCGCc -3'
miRNA:   3'- cGCGCGugUAa---GAUCGUCGCgaCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.