miRNA display CGI


Results 21 - 40 of 191 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24680 5' -55.1 NC_005264.1 + 147094 0.66 0.940127
Target:  5'- cGCGCGCACAcauaaUCaAGCcaGGCcGCcGUGCc -3'
miRNA:   3'- -CGCGCGUGUa----AGaUCG--UCG-CGaCGCG- -5'
24680 5' -55.1 NC_005264.1 + 146946 0.66 0.930176
Target:  5'- -gGCGCAgAggCUGGaUGGCGCUGaggcCGCa -3'
miRNA:   3'- cgCGCGUgUaaGAUC-GUCGCGAC----GCG- -5'
24680 5' -55.1 NC_005264.1 + 146774 0.67 0.907357
Target:  5'- aGCGcCGCGCggcgGUUCUcgguGCGGCGgUGUGg -3'
miRNA:   3'- -CGC-GCGUG----UAAGAu---CGUCGCgACGCg -5'
24680 5' -55.1 NC_005264.1 + 144781 0.69 0.825676
Target:  5'- cGCGCGCcCuggCUcGCGGCGCcGcCGCu -3'
miRNA:   3'- -CGCGCGuGuaaGAuCGUCGCGaC-GCG- -5'
24680 5' -55.1 NC_005264.1 + 143864 0.68 0.86603
Target:  5'- -gGCGCACGaagacUCUauaAGuCGGCGCggcggGCGCa -3'
miRNA:   3'- cgCGCGUGUa----AGA---UC-GUCGCGa----CGCG- -5'
24680 5' -55.1 NC_005264.1 + 143384 0.76 0.450801
Target:  5'- cGCGCGCAUAUaCUGGUgccgaugAGCGCcucGCGCc -3'
miRNA:   3'- -CGCGCGUGUAaGAUCG-------UCGCGa--CGCG- -5'
24680 5' -55.1 NC_005264.1 + 142047 0.69 0.817038
Target:  5'- gGCGUGCACgGUUCcccCGGCGCaacgauacUGCGCu -3'
miRNA:   3'- -CGCGCGUG-UAAGaucGUCGCG--------ACGCG- -5'
24680 5' -55.1 NC_005264.1 + 138991 0.69 0.790128
Target:  5'- cUGCGCGCGUUC--GUAGCGUUGUa- -3'
miRNA:   3'- cGCGCGUGUAAGauCGUCGCGACGcg -5'
24680 5' -55.1 NC_005264.1 + 138307 0.7 0.761916
Target:  5'- cGgGCGCACcgcaggcaaGUUgUGGUcauGGCGCgUGCGCg -3'
miRNA:   3'- -CgCGCGUG---------UAAgAUCG---UCGCG-ACGCG- -5'
24680 5' -55.1 NC_005264.1 + 138202 0.69 0.825676
Target:  5'- cCGUGgGgAUUa-AGCAuGCGCUGCGCg -3'
miRNA:   3'- cGCGCgUgUAAgaUCGU-CGCGACGCG- -5'
24680 5' -55.1 NC_005264.1 + 136899 0.72 0.66169
Target:  5'- gGCGCGUACGUg--AGCcGCGUcGUGCa -3'
miRNA:   3'- -CGCGCGUGUAagaUCGuCGCGaCGCG- -5'
24680 5' -55.1 NC_005264.1 + 136463 0.67 0.901049
Target:  5'- cCGCGCuCAg---AGaCGGCGCcGCGCa -3'
miRNA:   3'- cGCGCGuGUaagaUC-GUCGCGaCGCG- -5'
24680 5' -55.1 NC_005264.1 + 136358 0.67 0.901049
Target:  5'- cGgGCGCugGgcgCUGcCGGCGCgaauaGCGCu -3'
miRNA:   3'- -CgCGCGugUaa-GAUcGUCGCGa----CGCG- -5'
24680 5' -55.1 NC_005264.1 + 136166 0.67 0.893836
Target:  5'- aGCGUuCAacgccuuuuuuguCGUUCUAGCgcGGCGCcgGCGCc -3'
miRNA:   3'- -CGCGcGU-------------GUAAGAUCG--UCGCGa-CGCG- -5'
24680 5' -55.1 NC_005264.1 + 135135 0.66 0.913425
Target:  5'- aGUGUGCGCAUUgagAGCgAGCGUcgGCGa -3'
miRNA:   3'- -CGCGCGUGUAAga-UCG-UCGCGa-CGCg -5'
24680 5' -55.1 NC_005264.1 + 134881 0.69 0.825676
Target:  5'- gGCGCGCACcguugUUUGGaAGaCGCgGCGCc -3'
miRNA:   3'- -CGCGCGUGua---AGAUCgUC-GCGaCGCG- -5'
24680 5' -55.1 NC_005264.1 + 134789 0.66 0.913425
Target:  5'- cCGCGCGC-UUUUAccCGGCGUcGCGCg -3'
miRNA:   3'- cGCGCGUGuAAGAUc-GUCGCGaCGCG- -5'
24680 5' -55.1 NC_005264.1 + 133572 0.67 0.894504
Target:  5'- cCGCGCACAguccaacaaUCUGcgcgccGCAGUcuccGCUGUGCu -3'
miRNA:   3'- cGCGCGUGUa--------AGAU------CGUCG----CGACGCG- -5'
24680 5' -55.1 NC_005264.1 + 131716 0.69 0.790128
Target:  5'- uGCGCG-GCGUUgCUGGCgcucuGGCGCuacaaUGCGCu -3'
miRNA:   3'- -CGCGCgUGUAA-GAUCG-----UCGCG-----ACGCG- -5'
24680 5' -55.1 NC_005264.1 + 131576 0.66 0.91868
Target:  5'- uGCGCgGCACcuggcgccuagguGUggagggAGCGGCGCgcguggGCGCg -3'
miRNA:   3'- -CGCG-CGUG-------------UAaga---UCGUCGCGa-----CGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.