Results 41 - 60 of 191 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24680 | 5' | -55.1 | NC_005264.1 | + | 12015 | 0.69 | 0.799255 |
Target: 5'- cGUGauCGCAguUUUcaggGGCAGuCGCUGCGCu -3' miRNA: 3'- -CGC--GCGUguAAGa---UCGUC-GCGACGCG- -5' |
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24680 | 5' | -55.1 | NC_005264.1 | + | 81739 | 0.71 | 0.68222 |
Target: 5'- aCGCGUACcgAUUCUGGCGGCaagaaGCacgagacgUGCGCg -3' miRNA: 3'- cGCGCGUG--UAAGAUCGUCG-----CG--------ACGCG- -5' |
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24680 | 5' | -55.1 | NC_005264.1 | + | 50565 | 0.76 | 0.424449 |
Target: 5'- gGCGCGCGCGUgcgggaagCgcacGCGGCGCUGaGCa -3' miRNA: 3'- -CGCGCGUGUAa-------Gau--CGUCGCGACgCG- -5' |
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24680 | 5' | -55.1 | NC_005264.1 | + | 126075 | 0.69 | 0.790128 |
Target: 5'- cUGCGCGCA----AGCGGCGacgGCGCc -3' miRNA: 3'- cGCGCGUGUaagaUCGUCGCga-CGCG- -5' |
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24680 | 5' | -55.1 | NC_005264.1 | + | 75076 | 0.8 | 0.276768 |
Target: 5'- gGC-CGCugGUUCUucGCGGCGCUGCGg -3' miRNA: 3'- -CGcGCGugUAAGAu-CGUCGCGACGCg -5' |
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24680 | 5' | -55.1 | NC_005264.1 | + | 143864 | 0.68 | 0.86603 |
Target: 5'- -gGCGCACGaagacUCUauaAGuCGGCGCggcggGCGCa -3' miRNA: 3'- cgCGCGUGUa----AGA---UC-GUCGCGa----CGCG- -5' |
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24680 | 5' | -55.1 | NC_005264.1 | + | 94400 | 0.75 | 0.489526 |
Target: 5'- cCGCGCGCAgacc-GCGGCGCggacUGCGCg -3' miRNA: 3'- cGCGCGUGUaagauCGUCGCG----ACGCG- -5' |
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24680 | 5' | -55.1 | NC_005264.1 | + | 8244 | 0.68 | 0.858362 |
Target: 5'- aGCGCGguUAgUCUGGcCAGCG--GCGCc -3' miRNA: 3'- -CGCGCguGUaAGAUC-GUCGCgaCGCG- -5' |
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24680 | 5' | -55.1 | NC_005264.1 | + | 100920 | 0.68 | 0.850486 |
Target: 5'- uCGCGCAag--C-GGCGGCGCccgUGCGCc -3' miRNA: 3'- cGCGCGUguaaGaUCGUCGCG---ACGCG- -5' |
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24680 | 5' | -55.1 | NC_005264.1 | + | 81446 | 0.68 | 0.834136 |
Target: 5'- gGCGCGCacccGCAUgcaUCUcGGCAGUaaaCUGUGCg -3' miRNA: 3'- -CGCGCG----UGUA---AGA-UCGUCGc--GACGCG- -5' |
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24680 | 5' | -55.1 | NC_005264.1 | + | 138202 | 0.69 | 0.825676 |
Target: 5'- cCGUGgGgAUUa-AGCAuGCGCUGCGCg -3' miRNA: 3'- cGCGCgUgUAAgaUCGU-CGCGACGCG- -5' |
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24680 | 5' | -55.1 | NC_005264.1 | + | 53257 | 0.69 | 0.808228 |
Target: 5'- cGCGgGCGCGUgUCUGGCuugcuguccCGCgGCGCc -3' miRNA: 3'- -CGCgCGUGUA-AGAUCGuc-------GCGaCGCG- -5' |
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24680 | 5' | -55.1 | NC_005264.1 | + | 49841 | 0.69 | 0.799255 |
Target: 5'- uGCGCgaGCACGUacgccgcagccuUCUGGCGGaGCUGCu- -3' miRNA: 3'- -CGCG--CGUGUA------------AGAUCGUCgCGACGcg -5' |
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24680 | 5' | -55.1 | NC_005264.1 | + | 25715 | 0.7 | 0.77145 |
Target: 5'- gGCGCGgGC-----GGCAGCGgUGCGUa -3' miRNA: 3'- -CGCGCgUGuaagaUCGUCGCgACGCG- -5' |
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24680 | 5' | -55.1 | NC_005264.1 | + | 62612 | 0.7 | 0.761916 |
Target: 5'- gGCGCGgACGUUCcgAGCAacuGCGCccCGCg -3' miRNA: 3'- -CGCGCgUGUAAGa-UCGU---CGCGacGCG- -5' |
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24680 | 5' | -55.1 | NC_005264.1 | + | 93574 | 0.7 | 0.732648 |
Target: 5'- uCGCGCGCcccaUGGCAGCGgaugagGCGCg -3' miRNA: 3'- cGCGCGUGuaagAUCGUCGCga----CGCG- -5' |
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24680 | 5' | -55.1 | NC_005264.1 | + | 159400 | 0.71 | 0.702582 |
Target: 5'- cGUG-GCGC-UUUgcgAGCAGCGCggGCGCg -3' miRNA: 3'- -CGCgCGUGuAAGa--UCGUCGCGa-CGCG- -5' |
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24680 | 5' | -55.1 | NC_005264.1 | + | 34259 | 0.72 | 0.66169 |
Target: 5'- cGUGCGCGCGguaaUCc-GC-GUGCUGCGCu -3' miRNA: 3'- -CGCGCGUGUa---AGauCGuCGCGACGCG- -5' |
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24680 | 5' | -55.1 | NC_005264.1 | + | 61485 | 0.72 | 0.630733 |
Target: 5'- aGCGCGCcgacgcgccccGCggUCUcGGCuAGCGCcGCGCg -3' miRNA: 3'- -CGCGCG-----------UGuaAGA-UCG-UCGCGaCGCG- -5' |
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24680 | 5' | -55.1 | NC_005264.1 | + | 79447 | 0.74 | 0.558891 |
Target: 5'- cGCgGCGCGCAgaCgacgAGCGGCaGCUGgGCu -3' miRNA: 3'- -CG-CGCGUGUaaGa---UCGUCG-CGACgCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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