miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24681 3' -62.8 NC_005264.1 + 109882 0.66 0.668772
Target:  5'- aGCgGAauaCCCCGCGG-CGcaaugcGCCGCGGg- -3'
miRNA:   3'- -UGgCU---GGGGCGCCaGCa-----CGGUGCCag -5'
24681 3' -62.8 NC_005264.1 + 60958 0.66 0.668772
Target:  5'- cGCCGugUUCGUguGGUUGgugGUCGCGGUg -3'
miRNA:   3'- -UGGCugGGGCG--CCAGCa--CGGUGCCAg -5'
24681 3' -62.8 NC_005264.1 + 102233 0.66 0.653352
Target:  5'- aGCCGGCUgCCGCGGcauacgagaaggggcUCGagaacgccGCCGCGGUa -3'
miRNA:   3'- -UGGCUGG-GGCGCC---------------AGCa-------CGGUGCCAg -5'
24681 3' -62.8 NC_005264.1 + 5171 0.66 0.652386
Target:  5'- uGCCGGCCUCGuCGGacaagagaucuccugUCGUgucucgcGCCGCGG-Cg -3'
miRNA:   3'- -UGGCUGGGGC-GCC---------------AGCA-------CGGUGCCaG- -5'
24681 3' -62.8 NC_005264.1 + 124198 0.66 0.652386
Target:  5'- uGCCGGCCUCGuCGGacaagagaucuccugUCGUgucucgcGCCGCGG-Cg -3'
miRNA:   3'- -UGGCUGGGGC-GCC---------------AGCA-------CGGUGCCaG- -5'
24681 3' -62.8 NC_005264.1 + 68430 0.66 0.64949
Target:  5'- -gCGAUCgCGCaGUcCGcGCCGCGGUCu -3'
miRNA:   3'- ugGCUGGgGCGcCA-GCaCGGUGCCAG- -5'
24681 3' -62.8 NC_005264.1 + 119927 0.66 0.639826
Target:  5'- -aCGGCCCCGU-GUCGcggGCCGCuggggggaaGGUCg -3'
miRNA:   3'- ugGCUGGGGCGcCAGCa--CGGUG---------CCAG- -5'
24681 3' -62.8 NC_005264.1 + 34617 0.66 0.639826
Target:  5'- uACCGuuuguucaaGgCCCGCGGgguguUCGcgGCCAcCGGUCg -3'
miRNA:   3'- -UGGC---------UgGGGCGCC-----AGCa-CGGU-GCCAG- -5'
24681 3' -62.8 NC_005264.1 + 901 0.66 0.639826
Target:  5'- -aCGGCCCCGU-GUCGcggGCCGCuggggggaaGGUCg -3'
miRNA:   3'- ugGCUGGGGCGcCAGCa--CGGUG---------CCAG- -5'
24681 3' -62.8 NC_005264.1 + 60186 0.66 0.630157
Target:  5'- gACCGcucGCCCCacaauaccaaGCGaGUgCGUaGUCACGGUCa -3'
miRNA:   3'- -UGGC---UGGGG----------CGC-CA-GCA-CGGUGCCAG- -5'
24681 3' -62.8 NC_005264.1 + 136667 0.66 0.630157
Target:  5'- -aCGGCCCCGCcGacaGUGCCGCGaaaGUCc -3'
miRNA:   3'- ugGCUGGGGCGcCag-CACGGUGC---CAG- -5'
24681 3' -62.8 NC_005264.1 + 42259 0.66 0.630157
Target:  5'- gGCCGggGCCCgccuauugccggCGCGGUCaacGCCGCGGg- -3'
miRNA:   3'- -UGGC--UGGG------------GCGCCAGca-CGGUGCCag -5'
24681 3' -62.8 NC_005264.1 + 161286 0.66 0.630157
Target:  5'- gGCCGggGCCCgccuauugccggCGCGGUCaacGCCGCGGg- -3'
miRNA:   3'- -UGGC--UGGG------------GCGCCAGca-CGGUGCCag -5'
24681 3' -62.8 NC_005264.1 + 63292 0.66 0.630157
Target:  5'- aACCGGCCCCagucgggggauGCGGacUCccGCCuacCGGUCa -3'
miRNA:   3'- -UGGCUGGGG-----------CGCC--AGcaCGGu--GCCAG- -5'
24681 3' -62.8 NC_005264.1 + 62751 0.66 0.62049
Target:  5'- cGCUGAgCCCCGCGGcCGccaUGCUACGc-- -3'
miRNA:   3'- -UGGCU-GGGGCGCCaGC---ACGGUGCcag -5'
24681 3' -62.8 NC_005264.1 + 160457 0.67 0.601185
Target:  5'- cGCCGGgcUCCUGCGGgcgacggccacUCgGUGCCAgGGUUa -3'
miRNA:   3'- -UGGCU--GGGGCGCC-----------AG-CACGGUgCCAG- -5'
24681 3' -62.8 NC_005264.1 + 16171 0.67 0.601185
Target:  5'- uGCCG-CCCUGCgcggaGGUCG-GUCGCGG-Ca -3'
miRNA:   3'- -UGGCuGGGGCG-----CCAGCaCGGUGCCaG- -5'
24681 3' -62.8 NC_005264.1 + 41430 0.67 0.601185
Target:  5'- cGCCGGgcUCCUGCGGgcgacggccacUCgGUGCCAgGGUUa -3'
miRNA:   3'- -UGGCU--GGGGCGCC-----------AG-CACGGUgCCAG- -5'
24681 3' -62.8 NC_005264.1 + 29457 0.67 0.598295
Target:  5'- gGCUGcGCCgCCGCGaugacucucgccgaGUCGUcgaggaggGCCGCGGUCu -3'
miRNA:   3'- -UGGC-UGG-GGCGC--------------CAGCA--------CGGUGCCAG- -5'
24681 3' -62.8 NC_005264.1 + 116411 0.67 0.576218
Target:  5'- cGCUGAgCCCGCGGcaggucgcugggggCGUcugGCCGCGGg- -3'
miRNA:   3'- -UGGCUgGGGCGCCa-------------GCA---CGGUGCCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.