miRNA display CGI


Results 1 - 20 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24681 5' -55 NC_005264.1 + 143087 0.65 0.966957
Target:  5'- aCAAUCGCGGCgCgaugcUGgggGCACGGCGa -3'
miRNA:   3'- gGUUGGCGCUGgGa----GCa--UGUGCUGCa -5'
24681 5' -55 NC_005264.1 + 64406 0.65 0.966957
Target:  5'- cCCGGCCaaGGCCgaCGccgcggGCACGGCGa -3'
miRNA:   3'- -GGUUGGcgCUGGgaGCa-----UGUGCUGCa -5'
24681 5' -55 NC_005264.1 + 161926 0.65 0.966957
Target:  5'- uCCGACCuuccccccaGCGGCCCgCG-ACACGGggcCGUa -3'
miRNA:   3'- -GGUUGG---------CGCUGGGaGCaUGUGCU---GCA- -5'
24681 5' -55 NC_005264.1 + 43383 0.65 0.966957
Target:  5'- gCCGACCGUGAgUCU-GUGgGCGGCc- -3'
miRNA:   3'- -GGUUGGCGCUgGGAgCAUgUGCUGca -5'
24681 5' -55 NC_005264.1 + 104294 0.65 0.966957
Target:  5'- -aAAgCGCGACCCucugaguuuuUCGUgaccuugagGCGCGACGc -3'
miRNA:   3'- ggUUgGCGCUGGG----------AGCA---------UGUGCUGCa -5'
24681 5' -55 NC_005264.1 + 142023 0.66 0.963773
Target:  5'- gCCGuccgCGCGAUUggCGUGCAUGGCGUg -3'
miRNA:   3'- -GGUug--GCGCUGGgaGCAUGUGCUGCA- -5'
24681 5' -55 NC_005264.1 + 100393 0.66 0.963773
Target:  5'- gCCGcuGCUGCG-CCC-CGUAUugGuCGUg -3'
miRNA:   3'- -GGU--UGGCGCuGGGaGCAUGugCuGCA- -5'
24681 5' -55 NC_005264.1 + 129924 0.66 0.963773
Target:  5'- gCCc-CCGCGACCC-C-UGCGCGAuCGa -3'
miRNA:   3'- -GGuuGGCGCUGGGaGcAUGUGCU-GCa -5'
24681 5' -55 NC_005264.1 + 107928 0.66 0.963773
Target:  5'- gCCAgcagcGCCGCGACCUUC----GCGugGa -3'
miRNA:   3'- -GGU-----UGGCGCUGGGAGcaugUGCugCa -5'
24681 5' -55 NC_005264.1 + 101875 0.66 0.963773
Target:  5'- --cACCGCGACCaccaaccacaCGaACACGGCGg -3'
miRNA:   3'- gguUGGCGCUGGga--------GCaUGUGCUGCa -5'
24681 5' -55 NC_005264.1 + 78981 0.66 0.963443
Target:  5'- aCGGCCGa-GCCCUaCGUAUgcgcucaACGACGg -3'
miRNA:   3'- gGUUGGCgcUGGGA-GCAUG-------UGCUGCa -5'
24681 5' -55 NC_005264.1 + 27996 0.66 0.961763
Target:  5'- gUAGCCGCGGCCCaucgauccaggucggUCGgggGCGgGAgGUc -3'
miRNA:   3'- gGUUGGCGCUGGG---------------AGCa--UGUgCUgCA- -5'
24681 5' -55 NC_005264.1 + 127367 0.66 0.96038
Target:  5'- aUCGGCCGCGgcACUCUCGcgucAgGCGAUGg -3'
miRNA:   3'- -GGUUGGCGC--UGGGAGCa---UgUGCUGCa -5'
24681 5' -55 NC_005264.1 + 35285 0.66 0.96038
Target:  5'- gCGGCCGUGGUCCUgacUGUuCACGACGc -3'
miRNA:   3'- gGUUGGCGCUGGGA---GCAuGUGCUGCa -5'
24681 5' -55 NC_005264.1 + 76070 0.66 0.96038
Target:  5'- --cGCCGCGACgCCgCGaGCGuCGACGg -3'
miRNA:   3'- gguUGGCGCUG-GGaGCaUGU-GCUGCa -5'
24681 5' -55 NC_005264.1 + 140879 0.66 0.96038
Target:  5'- aCCAauGCCGCGACCacuCUCGgGCAUcaGACc- -3'
miRNA:   3'- -GGU--UGGCGCUGG---GAGCaUGUG--CUGca -5'
24681 5' -55 NC_005264.1 + 85887 0.66 0.96038
Target:  5'- aCCGagGCCGUGAaaggCCUCGUaACGCaGGCGc -3'
miRNA:   3'- -GGU--UGGCGCUg---GGAGCA-UGUG-CUGCa -5'
24681 5' -55 NC_005264.1 + 98084 0.66 0.96038
Target:  5'- gCGGCCaaaucuaucaggGCGAUCCUUGcgcgggGCACGGCGc -3'
miRNA:   3'- gGUUGG------------CGCUGGGAGCa-----UGUGCUGCa -5'
24681 5' -55 NC_005264.1 + 146143 0.66 0.958243
Target:  5'- -gGACCGCGACCacgucuUCGUgucgaugccucgcauGCACGucGCGUg -3'
miRNA:   3'- ggUUGGCGCUGGg-----AGCA---------------UGUGC--UGCA- -5'
24681 5' -55 NC_005264.1 + 121897 0.66 0.956774
Target:  5'- gCGGCUGCGAUcgaCCggggCGcgGCGCGGCGg -3'
miRNA:   3'- gGUUGGCGCUG---GGa---GCa-UGUGCUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.