miRNA display CGI


Results 1 - 20 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24681 5' -55 NC_005264.1 + 143087 0.65 0.966957
Target:  5'- aCAAUCGCGGCgCgaugcUGgggGCACGGCGa -3'
miRNA:   3'- gGUUGGCGCUGgGa----GCa--UGUGCUGCa -5'
24681 5' -55 NC_005264.1 + 161926 0.65 0.966957
Target:  5'- uCCGACCuuccccccaGCGGCCCgCG-ACACGGggcCGUa -3'
miRNA:   3'- -GGUUGG---------CGCUGGGaGCaUGUGCU---GCA- -5'
24681 5' -55 NC_005264.1 + 43383 0.65 0.966957
Target:  5'- gCCGACCGUGAgUCU-GUGgGCGGCc- -3'
miRNA:   3'- -GGUUGGCGCUgGGAgCAUgUGCUGca -5'
24681 5' -55 NC_005264.1 + 104294 0.65 0.966957
Target:  5'- -aAAgCGCGACCCucugaguuuuUCGUgaccuugagGCGCGACGc -3'
miRNA:   3'- ggUUgGCGCUGGG----------AGCA---------UGUGCUGCa -5'
24681 5' -55 NC_005264.1 + 64406 0.65 0.966957
Target:  5'- cCCGGCCaaGGCCgaCGccgcggGCACGGCGa -3'
miRNA:   3'- -GGUUGGcgCUGGgaGCa-----UGUGCUGCa -5'
24681 5' -55 NC_005264.1 + 127367 0.66 0.96038
Target:  5'- aUCGGCCGCGgcACUCUCGcgucAgGCGAUGg -3'
miRNA:   3'- -GGUUGGCGC--UGGGAGCa---UgUGCUGCa -5'
24681 5' -55 NC_005264.1 + 116876 0.66 0.948907
Target:  5'- cCCAuacaaCGUGACggcagCCUCGUGCucaaACGACGUc -3'
miRNA:   3'- -GGUug---GCGCUG-----GGAGCAUG----UGCUGCA- -5'
24681 5' -55 NC_005264.1 + 58497 0.66 0.948907
Target:  5'- gCCcGCCugaGCGGCaccuCCUCGUAaGCGGCGUc -3'
miRNA:   3'- -GGuUGG---CGCUG----GGAGCAUgUGCUGCA- -5'
24681 5' -55 NC_005264.1 + 23752 0.66 0.948907
Target:  5'- gCAGCCGCGA-CgUCGUAauagGCGACa- -3'
miRNA:   3'- gGUUGGCGCUgGgAGCAUg---UGCUGca -5'
24681 5' -55 NC_005264.1 + 38552 0.66 0.948907
Target:  5'- uCCGGCCGCGACucgCCUCccgGCGCucuaaACGUa -3'
miRNA:   3'- -GGUUGGCGCUG---GGAGca-UGUGc----UGCA- -5'
24681 5' -55 NC_005264.1 + 142970 0.66 0.948907
Target:  5'- gCGGCCGCGGCggucUCUCGgGCAUGAgGc -3'
miRNA:   3'- gGUUGGCGCUG----GGAGCaUGUGCUgCa -5'
24681 5' -55 NC_005264.1 + 154902 0.66 0.948907
Target:  5'- --cGCCGCGGCCgUgGacgACGCGugGa -3'
miRNA:   3'- gguUGGCGCUGGgAgCa--UGUGCugCa -5'
24681 5' -55 NC_005264.1 + 16839 0.66 0.952951
Target:  5'- cCCAuaacgcgcacGCCGUagaGGCCCUCGUugAccuuguCGGCGg -3'
miRNA:   3'- -GGU----------UGGCG---CUGGGAGCAugU------GCUGCa -5'
24681 5' -55 NC_005264.1 + 37567 0.66 0.952951
Target:  5'- aCGACCGCGACggaggcggcaagUCUCGcggcggcCGCGGCGg -3'
miRNA:   3'- gGUUGGCGCUG------------GGAGCau-----GUGCUGCa -5'
24681 5' -55 NC_005264.1 + 44934 0.66 0.956774
Target:  5'- gCgAACCGCGGgCC-CGuUGCGCG-CGUg -3'
miRNA:   3'- -GgUUGGCGCUgGGaGC-AUGUGCuGCA- -5'
24681 5' -55 NC_005264.1 + 2871 0.66 0.956774
Target:  5'- gCGGCUGCGAUcgaCCggggCGcgGCGCGGCGg -3'
miRNA:   3'- gGUUGGCGCUG---GGa---GCa-UGUGCUGCa -5'
24681 5' -55 NC_005264.1 + 20155 0.66 0.956774
Target:  5'- --cGCCGCcggcGCCCaagaUCGcgGCACGACGUa -3'
miRNA:   3'- gguUGGCGc---UGGG----AGCa-UGUGCUGCA- -5'
24681 5' -55 NC_005264.1 + 59054 0.66 0.956774
Target:  5'- uCCgAACCGCGAUCUugUUGUugGCGAg-- -3'
miRNA:   3'- -GG-UUGGCGCUGGG--AGCAugUGCUgca -5'
24681 5' -55 NC_005264.1 + 76070 0.66 0.96038
Target:  5'- --cGCCGCGACgCCgCGaGCGuCGACGg -3'
miRNA:   3'- gguUGGCGCUG-GGaGCaUGU-GCUGCa -5'
24681 5' -55 NC_005264.1 + 98084 0.66 0.96038
Target:  5'- gCGGCCaaaucuaucaggGCGAUCCUUGcgcgggGCACGGCGc -3'
miRNA:   3'- gGUUGG------------CGCUGGGAGCa-----UGUGCUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.